PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6CDM

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	100.0	H1	13	H1-13-1	7	KASGYTFTDYEMH	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	80.0	H2	10	H2-10-1	7	AIVPETGFTA	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	50.0	H3	11	H3-11-*	-1	SRLRLYWYFDV	BBBBBLBBBAB
A	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	100.0	H4	8	H4-8-1	8	ADKSSSTA	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	95.6	Mo_IGKV1-117*01	93.8	L1	16	L1-16-1	8	RSSQSIvysngNTYLE	BBABBABBAALBBBBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	95.6	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	5	YKVSNRFS	BLEABBBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	95.6	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	11	FQGSHVPYT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	95.6	Mo_IGKV1-117*01	100.0	L4	6	L4-6-2	16	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	100.0	H1	13	H1-13-1	7	KASGYTFTDYEMH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	80.0	H2	10	H2-10-1	7	AIVPETGFTA	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	50.0	H3	11	H3-11-*	-1	SRLRLYWYFDV	BBBBBLBBBAB
D	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	100.0	H4	8	H4-8-1	8	ADKSSSTA	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV1-117*01	95.6	Mo_IGKV1-117*01	93.8	L1	16	L1-16-1	7	RSSQSIvysngNTYLE	BBABBABBAALBBBBB
E	kappa	Mus.musculus	Mo_IGKV1-117*01	95.6	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	4	YKVSNRFS	BLEABBBB
E	kappa	Mus.musculus	Mo_IGKV1-117*01	95.6	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	12	FQGSHVPYT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV1-117*01	95.6	Mo_IGKV1-117*01	100.0	L4	6	L4-6-2	16	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022