PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6BLI

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV4-59*02	93.2	Hu_IGHV4-59*02	76.9	H1	13	H1-13-*	-1	TVSGGSTSSYFWN	BBBLBBAABEBBB
A	heavy	Homo.sapiens	Hu_IGHV4-59*02	93.2	Hu_IGHV4-59*02	66.7	H2	9	H2-9-*	-1	YIYGSGSAD	BBBEALBBB
A	heavy	Homo.sapiens	Hu_IGHV4-59*02	93.2	Hu_IGHV4-59*02	100.0	H3	20	H3-20-*	-1	ARSGFcsddacYRRGSWFDP
A	heavy	Homo.sapiens	Hu_IGHV4-59*02	93.2	Hu_IGHV4-59*02	75.0	H4	8	H4-8-*	-1	IDTSKTQF	BBAALABB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	81.8	L1	11	L1-11-1	5	RASQSIDNYLN	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	87.5	L2	8	L2-8-1	9	YAASGLQS	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	85.7	L3	10	L3-10-*	-1	QQSYSTltWT	BBAABAABBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	7	GSGTEF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV4-59*02	93.2	Hu_IGHV4-59*02	76.9	H1	13	H1-13-*	-1	TVSGGSTSSYFWN	BBBLBBAABEBBB
D	heavy	Homo.sapiens	Hu_IGHV4-59*02	93.2	Hu_IGHV4-59*02	66.7	H2	9	H2-9-*	-1	YIYGSGSAD	BBBEALBBB
D	heavy	Homo.sapiens	Hu_IGHV4-59*02	93.2	Hu_IGHV4-59*02	100.0	H3	20	H3-20-*	-1	ARSGFcsddacYRRGSWFDP
D	heavy	Homo.sapiens	Hu_IGHV4-59*02	93.2	Hu_IGHV4-59*02	75.0	H4	8	H4-8-*	-1	IDTSKTQF	BBAALABB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	81.8	L1	11	L1-11-1	6	RASQSIDNYLN	BBABBAEABBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	87.5	L2	8	L2-8-1	7	YAASGLQS	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	85.7	L3	10	L3-10-*	-1	QQSYSTltWT	BBAABAABBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	5	GSGTEF	EBEABB
G	heavy	Homo.sapiens	Hu_IGHV4-59*02	93.2	Hu_IGHV4-59*02	76.9	H1	13	H1-13-*	-1	TVSGGSTSSYFWN	BBBLEBAABEBBB
G	heavy	Homo.sapiens	Hu_IGHV4-59*02	93.2	Hu_IGHV4-59*02	66.7	H2	9	H2-9-*	-1	YIYGSGSAD	BBBEALBBB
G	heavy	Homo.sapiens	Hu_IGHV4-59*02	93.2	Hu_IGHV4-59*02	100.0	H3	20	H3-20-*	-1	ARSGFcsddacYRRGSWFDP
G	heavy	Homo.sapiens	Hu_IGHV4-59*02	93.2	Hu_IGHV4-59*02	75.0	H4	8	H4-8-*	-1	IDTSKTQF	BBABAABB
H	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	81.8	L1	11	L1-11-1	7	RASQSIDNYLN	BBABBAEABBB
H	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	87.5	L2	8	L2-8-1	6	YAASGLQS	BLLABBBB
H	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	85.7	L3	10	L3-10-*	-1	QQSYSTltWT	BBAABAABBB
H	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	11	GSGTEF	EBEABB
J	heavy	Homo.sapiens	Hu_IGHV4-59*02	93.2	Hu_IGHV4-59*02	76.9	H1	13	H1-13-*	-1	TVSGGSTSSYFWN	BBBLBBAABEBBB
J	heavy	Homo.sapiens	Hu_IGHV4-59*02	93.2	Hu_IGHV4-59*02	66.7	H2	9	H2-9-*	-1	YIYGSGSAD	BBBEALBBB
J	heavy	Homo.sapiens	Hu_IGHV4-59*02	93.2	Hu_IGHV4-59*02	100.0	H3	20	H3-20-*	-1	ARSGFcsddacYRRGSWFDP
J	heavy	Homo.sapiens	Hu_IGHV4-59*02	93.2	Hu_IGHV4-59*02	75.0	H4	8	H4-8-*	-1	IDTSKTQF	BBAALABB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	81.8	L1	11	L1-11-1	6	RASQSIDNYLN	BBABBAEABBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	87.5	L2	8	L2-8-1	10	YAASGLQS	BLLABBBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	85.7	L3	10	L3-10-*	-1	QQSYSTltWT	BBAABAABBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	7	GSGTEF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022