PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6B3M

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	69.2	H1	13	H1-13-*	-1	RASGGIFRSNAIS	BBBlABBBABBBB
C	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	70.0	H2	10	H2-10-1	19	NIIAVFGTAN	BBBAAALBBB
C	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H3	14	H3-14-*	-1	ARGPYYYGNSHlDF
C	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H4	8	H4-8-1	16	ADESTSTA	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	91.7	L1	12	L1-12-*	-1	RASQSVSsNYLA
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	10	YGASNRAT	BLEABBBB
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	85.7	L3	9	L3-9-cis7-1	11	QQYGTSPRT	BBAABBbBB
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
I	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	69.2	H1	13	H1-13-*	-1	RASGGIFRSNAIS	BBBlABBBABBBB
I	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	70.0	H2	10	H2-10-1	19	NIIAVFGTAN	BBBAAALBBB
I	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H3	14	H3-14-*	-1	ARGPYYYGNSHlDF
I	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H4	8	H4-8-1	16	ADESTSTA	BBAAALBB
J	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	91.7	L1	12	L1-12-*	-1	RASQSVSsNYLA
J	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	10	YGASNRAT	BLEABBBB
J	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	85.7	L3	9	L3-9-cis7-1	11	QQYGTSPRT	BBAABBbBB
J	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
M	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	69.2	H1	13	H1-13-*	-1	RASGGIFRSNAIS	BBBlABBBABBBB
M	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	70.0	H2	10	H2-10-1	19	NIIAVFGTAN	BBBAAALBBB
M	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H3	14	H3-14-*	-1	ARGPYYYGNSHlDF
M	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H4	8	H4-8-1	16	ADESTSTA	BBAAALBB
N	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	91.7	L1	12	L1-12-*	-1	RASQSVSsNYLA
N	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	10	YGASNRAT	BLEABBBB
N	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	85.7	L3	9	L3-9-cis7-1	10	QQYGTSPRT	BBAABBbBB
N	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
O	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	69.2	H1	13	H1-13-*	-1	RASGGIFRSNAIS	BBBlABBBABBBB
O	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	70.0	H2	10	H2-10-1	19	NIIAVFGTAN	BBBAAALBBB
O	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H3	14	H3-14-*	-1	ARGPYYYGNSHlDF
O	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H4	8	H4-8-1	16	ADESTSTA	BBAAALBB
P	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	91.7	L1	12	L1-12-*	-1	RASQSVSsNYLA
P	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	10	YGASNRAT	BLEABBBB
P	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	85.7	L3	9	L3-9-cis7-1	11	QQYGTSPRT	BBAABBbBB
P	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
U	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	91.7	L1	12	L1-12-*	-1	RASQSVSsNYLA
U	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	10	YGASNRAT	BLEABBBB
U	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	85.7	L3	9	L3-9-cis7-1	11	QQYGTSPRT	BBAABBbBB
U	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
V	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	69.2	H1	13	H1-13-*	-1	RASGGIFRSNAIS	BBBlABBBABBBB
V	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	70.0	H2	10	H2-10-1	19	NIIAVFGTAN	BBBAAALBBB
V	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H3	14	H3-14-*	-1	ARGPYYYGNSHlDF
V	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H4	8	H4-8-1	15	ADESTSTA	BBAAALBB
W	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	91.7	L1	12	L1-12-*	-1	RASQSVSsNYLA
W	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	9	YGASNRAT	BLEABBBB
W	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	85.7	L3	9	L3-9-cis7-1	11	QQYGTSPRT	BBAABBbBB
W	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
Y	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	69.2	H1	13	H1-13-*	-1	RASGGIFRSNAIS	BBBlABBBABBBB
Y	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	70.0	H2	10	H2-10-1	19	NIIAVFGTAN	BBBAAALBBB
Y	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H3	14	H3-14-*	-1	ARGPYYYGNSHlDF
Y	heavy	Homo.sapiens	Hu_IGHV1-69*15	100.0	Hu_IGHV1-69*15	100.0	H4	8	H4-8-1	16	ADESTSTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022