PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6APD

#CDRs = 8; #Clusters = 13.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
D	heavy	Homo.sapiens	Hu_IGHV1-24*01	82.2	Hu_IGHV1-24*01	61.5	H1	13	H1-13-1	16	KISGHTLIKLSIH	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV1-24*01	82.2	Hu_IGHV1-24*01	30.0	H2	10	H2-10-1	19	GYEGEVDEIF	BBBAAALBBB
D	heavy	Homo.sapiens	Hu_IGHV1-24*01	82.2	Hu_IGHV1-24*01	50.0	H3	17	H3-17-*	-1	GTLGVTVTEAGLgidDY
D	heavy	Homo.sapiens	Hu_IGHV1-24*01	82.2	Hu_IGHV1-24*01	62.5	H4	8	H4-8-1	9	ADTATDTV	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*02	92.8	Hu_IGKV3-20*02	66.7	L1	12	L1-12-1	12	RASQIVSrNHLA	BBABBBBAAABB
E	kappa	Homo.sapiens	Hu_IGKV3-20*02	92.8	Hu_IGKV3-20*02	87.5	L2	8	L2-8-1	21	FGASSRAT	BLEBBBBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*02	92.8	Hu_IGKV3-20*02	0.0	L3	9	L3-9-1	18	LSSDSSIFT	BBBBLLBBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*02	92.8	Hu_IGKV3-20*02	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV1-24*01	82.2	Hu_IGHV1-24*01	61.5	H1	13	H1-13-1	16	KISGHTLIKLSIH	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV1-24*01	82.2	Hu_IGHV1-24*01	30.0	H2	10	H2-10-1	19	GYEGEVDEIF	BBBAAALBBB
F	heavy	Homo.sapiens	Hu_IGHV1-24*01	82.2	Hu_IGHV1-24*01	50.0	H3	17	H3-17-*	-1	GTLGVTVTEAGLgidDY
F	heavy	Homo.sapiens	Hu_IGHV1-24*01	82.2	Hu_IGHV1-24*01	62.5	H4	8	H4-8-1	9	ADTATDTV	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*02	92.8	Hu_IGKV3-20*02	66.7	L1	12	L1-12-1	12	RASQIVSrNHLA	BBABBBBAAABB
G	kappa	Homo.sapiens	Hu_IGKV3-20*02	92.8	Hu_IGKV3-20*02	87.5	L2	8	L2-8-1	21	FGASSRAT	BLEBBBBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*02	92.8	Hu_IGKV3-20*02	0.0	L3	9	L3-9-1	19	LSSDSSIFT	BBBBLLBBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*02	92.8	Hu_IGKV3-20*02	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV1-24*01	82.2	Hu_IGHV1-24*01	61.5	H1	13	H1-13-1	16	KISGHTLIKLSIH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-24*01	82.2	Hu_IGHV1-24*01	30.0	H2	10	H2-10-1	19	GYEGEVDEIF	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-24*01	82.2	Hu_IGHV1-24*01	50.0	H3	17	H3-17-*	-1	GTLGVTVTEAGLgidDY
H	heavy	Homo.sapiens	Hu_IGHV1-24*01	82.2	Hu_IGHV1-24*01	62.5	H4	8	H4-8-1	9	ADTATDTV	BBAAALBB
I	kappa	Homo.sapiens	Hu_IGKV3-20*02	92.8	Hu_IGKV3-20*02	66.7	L1	12	L1-12-1	12	RASQIVSrNHLA	BBABBBBAAABB
I	kappa	Homo.sapiens	Hu_IGKV3-20*02	92.8	Hu_IGKV3-20*02	87.5	L2	8	L2-8-1	22	FGASSRAT	BLEBBBBB
I	kappa	Homo.sapiens	Hu_IGKV3-20*02	92.8	Hu_IGKV3-20*02	0.0	L3	9	L3-9-1	19	LSSDSSIFT	BBBBLLBBB
I	kappa	Homo.sapiens	Hu_IGKV3-20*02	92.8	Hu_IGKV3-20*02	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
J	heavy	Homo.sapiens	Hu_IGHV3-21*01	100.0	Hu_IGHV3-21*01	100.0	H1	13	H1-13-1	11	AASGFTFSSYSMN	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV3-21*01	100.0	Hu_IGHV3-21*01	100.0	H2	10	H2-10-2	14	SISSSSSYIY	BBBAALABBB
J	heavy	Homo.sapiens	Hu_IGHV3-21*01	100.0	Hu_IGHV3-21*01	100.0	H3	15	H3-15-*	-1	ARLGYCSgGSCHFDY
J	heavy	Homo.sapiens	Hu_IGHV3-21*01	100.0	Hu_IGHV3-21*01	100.0	H4	8	H4-8-1	8	RDNAKNSL	BBAAALBB
K	heavy	Homo.sapiens	Hu_IGHV3-21*01	100.0	Hu_IGHV3-21*01	100.0	H1	13	H1-13-1	10	AASGFTFSSYSMN	BBBLBBAAABBBB
K	heavy	Homo.sapiens	Hu_IGHV3-21*01	100.0	Hu_IGHV3-21*01	100.0	H2	10	H2-10-2	14	SISSSSSYIY	BBBAALABBB
K	heavy	Homo.sapiens	Hu_IGHV3-21*01	100.0	Hu_IGHV3-21*01	100.0	H3	15	H3-15-*	-1	ARLGYCSgGSCHFDY
K	heavy	Homo.sapiens	Hu_IGHV3-21*01	100.0	Hu_IGHV3-21*01	100.0	H4	8	H4-8-1	8	RDNAKNSL	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L1	14	L1-14-3	9	TGSSSNIGAgYDVH	BBBAAAAAALBBBB
L	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L2	8	L2-8-1	9	YGNSNRPS	BLLABBBB
L	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L3	12	L3-12-*	-1	QSYDSSLSGfYV
L	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L4	6	L4-6-2	13	KSGTSA	BBEABB
M	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L1	14	L1-14-3	9	TGSSSNIGAgYDVH	BBBAAAAAALBBBB
M	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L2	8	L2-8-1	9	YGNSNRPS	BLLABBBB
M	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L3	12	L3-12-*	-1	QSYDSSLSGfYV
M	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L4	6	L4-6-2	13	KSGTSA	BBEABB
N	heavy	Homo.sapiens	Hu_IGHV3-21*01	100.0	Hu_IGHV3-21*01	100.0	H1	13	H1-13-1	11	AASGFTFSSYSMN	BBBLBBAAABBBB
N	heavy	Homo.sapiens	Hu_IGHV3-21*01	100.0	Hu_IGHV3-21*01	100.0	H2	10	H2-10-2	14	SISSSSSYIY	BBBAALABBB
N	heavy	Homo.sapiens	Hu_IGHV3-21*01	100.0	Hu_IGHV3-21*01	100.0	H3	15	H3-15-*	-1	ARLGYCSgGSCHFDY
N	heavy	Homo.sapiens	Hu_IGHV3-21*01	100.0	Hu_IGHV3-21*01	100.0	H4	8	H4-8-1	8	RDNAKNSL	BBAAALBB
O	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L1	14	L1-14-3	9	TGSSSNIGAgYDVH	BBBAAAAAALBBBB
O	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L2	8	L2-8-1	9	YGNSNRPS	BLLABBBB
O	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L3	12	L3-12-*	-1	QSYDSSLSGfYV
O	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L4	6	L4-6-2	13	KSGTSA	BBEABB

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