PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6AJ9

#CDRs = 8; #Clusters = 12.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
D	heavy	Mus.musculus	Mo_IGHV1S137*01	97.3	Mo_IGHV1S137*01	84.6	H1	13	H1-13-*	-1	KGSGYIFTDYVMH	BBBLBBBLABBBB
D	heavy	Mus.musculus	Mo_IGHV1S137*01	97.3	Mo_IGHV1S137*01	90.0	H2	10	H2-10-*	-1	VISTYYGDGS	BALLBLBAEB
D	heavy	Mus.musculus	Mo_IGHV1S137*01	97.3	Mo_IGHV1S137*01	50.0	H3	15	H3-15-*	-1	VRGENYYgVSGTMDY
D	heavy	Mus.musculus	Mo_IGHV1S137*01	97.3	Mo_IGHV1S137*01	100.0	H4	8	H4-8-1	15	VDKSSSTA	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV8-30*01	95.7	Mo_IGKV8-30*01	94.1	L1	17	L1-17-1	16	KSSQSLlysnnqKNYLA	BBABBABBAAALBBBBB
E	kappa	Mus.musculus	Mo_IGKV8-30*01	95.7	Mo_IGKV8-30*01	100.0	L2	8	L2-8-1	15	YWASTRES	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV8-30*01	95.7	Mo_IGKV8-30*01	85.7	L3	9	L3-9-cis7-1	10	QQYYNYPWT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV8-30*01	95.7	Mo_IGKV8-30*01	83.3	L4	6	L4-6-2	23	ESGTDF	BBEABB
H	heavy	Mus.musculus	Mo_IGHV1-7*01	91.8	Mo_IGHV1-7*01	92.3	H1	13	H1-13-*	-1	KASGYTFTNYWMH	BBBLBBBLABBBB
H	heavy	Mus.musculus	Mo_IGHV1-7*01	91.8	Mo_IGHV1-7*01	50.0	H2	10	H2-10-1	16	YVNPNTDYTD	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-7*01	91.8	Mo_IGHV1-7*01	100.0	H3	13	H3-13-*	-1	ARGTFGNYASFAY	BBBBAALALBBAB
H	heavy	Mus.musculus	Mo_IGHV1-7*01	91.8	Mo_IGHV1-7*01	100.0	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV9-123*01	100.0	Mo_IGKV9-123*01	90.9	L1	11	L1-11-*	-1	RASQDIRGNLD	BBABBALELBB
L	kappa	Mus.musculus	Mo_IGKV9-123*01	100.0	Mo_IGKV9-123*01	100.0	L2	8	L2-8-1	24	YSTSNLNS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV9-123*01	100.0	Mo_IGKV9-123*01	100.0	L3	9	L3-9-cis7-1	9	LQRNAYPLT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV9-123*01	100.0	Mo_IGKV9-123*01	100.0	L4	6	L4-6-*	-1	GSGSDY	BBAABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022