PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5ZIA

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	84.6	H1	13	H1-13-1	10	TASGYTFTGYYLH	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	70.0	H2	10	H2-10-1	13	WVNPRSGGTS	BBBAAALBBB
A	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	50.0	H3	13	H3-13-*	-1	AVGRIPDVTAFDI	BBBABBLBBBBAB
A	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	87.5	H4	8	H4-8-1	12	RDTSINTA	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	82.4	L1	17	L1-17-*	-1	KSSESLlydsnnKNYLA	BBAAEABBAAALBBBBB
B	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	9	YWASTRES	BLEABBBB
B	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	85.7	L3	9	L3-9-cis7-1	10	QQYFSTPWT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	83.3	L4	6	L4-6-1	7	GSETDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	84.6	H1	13	H1-13-1	10	TASGYTFTGYYLH	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	70.0	H2	10	H2-10-1	12	WVNPRSGGTS	BBBAAALBBB
D	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	50.0	H3	13	H3-13-*	-1	AVGRIPDVTAFDI	BBBABBLBBBBAB
D	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	87.5	H4	8	H4-8-1	12	RDTSINTA	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	82.4	L1	17	L1-17-*	-1	KSSESLlydsnnKNYLA	BBAAEABBAAALBBBBB
E	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	7	YWASTRES	BLEABBBB
E	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	85.7	L3	9	L3-9-cis7-1	10	QQYFSTPWT	BBAABBbBB
E	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	83.3	L4	6	L4-6-1	11	GSETDF	EBEABB
G	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	84.6	H1	13	H1-13-1	11	TASGYTFTGYYLH	BBBLBBAAABBBB
G	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	70.0	H2	10	H2-10-1	13	WVNPRSGGTS	BBBAAALBBB
G	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	50.0	H3	13	H3-13-*	-1	AVGRIPDVTAFDI	BBBABBLBBBBAB
G	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	87.5	H4	8	H4-8-1	12	RDTSINTA	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	84.6	H1	13	H1-13-1	11	TASGYTFTGYYLH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	70.0	H2	10	H2-10-1	13	WVNPRSGGTS	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	50.0	H3	13	H3-13-*	-1	AVGRIPDVTAFDI	BBBABBLBBBBAB
H	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	87.5	H4	8	H4-8-1	16	RDTSINTA	BBAAALBB
I	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	82.4	L1	17	L1-17-*	-1	KSSESLlydsnnKNYLA	BBAAEABBAAALBBBBB
I	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	7	YWASTRES	BLEABBBB
I	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	85.7	L3	9	L3-9-cis7-1	9	QQYFSTPWT	BBAABBbBB
I	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	83.3	L4	6	L4-6-1	13	GSETDF	EBEABB
K	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	84.6	H1	13	H1-13-1	12	TASGYTFTGYYLH	BBBLBBAAABBBB
K	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	70.0	H2	10	H2-10-1	15	WVNPRSGGTS	BBBAAALBBB
K	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	50.0	H3	13	H3-13-*	-1	AVGRIPDVTAFDI	BBBABBLBBBBAB
K	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	87.5	H4	8	H4-8-1	13	RDTSINTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	82.4	L1	17	L1-17-*	-1	KSSESLlydsnnKNYLA	BBAAEABBAAALBBBBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	7	YWASTRES	BLEABBBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	85.7	L3	9	L3-9-cis7-1	10	QQYFSTPWT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	83.3	L4	6	L4-6-1	12	GSETDF	EBEABB
M	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	82.4	L1	17	L1-17-*	-1	KSSESLlydsnnKNYLA	BBAAEABBAAALBBBBB
M	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	8	YWASTRES	BLEABBBB
M	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	85.7	L3	9	L3-9-cis7-1	11	QQYFSTPWT	BBAABBbBB
M	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	83.3	L4	6	L4-6-1	13	GSETDF	EBEABB
O	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	84.6	H1	13	H1-13-1	13	TASGYTFTGYYLH	BBBLBBAAABBBB
O	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	70.0	H2	10	H2-10-1	14	WVNPRSGGTS	BBBAAALBBB
O	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	50.0	H3	13	H3-13-*	-1	AVGRIPDVTAFDI	BBBABBLBBBBAB
O	heavy	Homo.sapiens	Hu_IGHV1-2*07	90.4	Hu_IGHV1-2*07	87.5	H4	8	H4-8-1	17	RDTSINTA	BBAAALBB
P	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	82.4	L1	17	L1-17-*	-1	KSSESLlydsnnKNYLA	BBAAEABBAAEBBBBBB
P	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	100.0	L2	8	L2-8-1	10	YWASTRES	BLEABBBB
P	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	85.7	L3	9	L3-9-cis7-1	13	QQYFSTPWT	BBAABBbBB
P	kappa	Homo.sapiens	Hu_IGKV4-1*01	95.7	Hu_IGKV4-1*01	83.3	L4	6	L4-6-1	13	GSETDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022