PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5YY5

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.1	Hu_IGHV3-30*01	84.6	H1	13	H1-13-1	12	AASGFTFSNYAMY	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.1	Hu_IGHV3-30*01	60.0	H2	10	H2-10-*	-1	LISYDISTDY	BBBAALBBBB
C	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.1	Hu_IGHV3-30*01	0.0	H3	5	H3-5-*	-1	TNTYY	BBAAB
C	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.1	Hu_IGHV3-30*01	87.5	H4	8	H4-8-1	9	RDNSKNTI	BBAAALBB
D	lambda	Homo.sapiens	Hu_IGLV1-47*02	98.5	Hu_IGLV1-47*02	92.3	L1	13	L1-13-*	-1	SGSSSNIGNNYVY	BBBAAABLABBBB
D	lambda	Homo.sapiens	Hu_IGLV1-47*02	98.5	Hu_IGLV1-47*02	75.0	L2	8	L2-8-*	-1	YWNDQRPS	BLLLBBBB
D	lambda	Homo.sapiens	Hu_IGLV1-47*02	98.5	Hu_IGLV1-47*02	100.0	L3	11	L3-11-1	10	AAWDDSLSGAV	BBBBAAALBBB
D	lambda	Homo.sapiens	Hu_IGLV1-47*02	98.5	Hu_IGLV1-47*02	100.0	L4	6	L4-6-3	29	KSGTSA	BAAABB
H	heavy	Homo.sapiens	Hu_IGHV3-30*01	91.8	Hu_IGHV3-30*01	84.6	H1	13	H1-13-1	12	AASGFTFSNYAMY	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*01	91.8	Hu_IGHV3-30*01	60.0	H2	10	H2-10-*	-1	LISYDISTDY	BBBAALBBBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*01	91.8	Hu_IGHV3-30*01	0.0	H3	5	H3-5-*	-1	TNTYY	BBAAB
H	heavy	Homo.sapiens	Hu_IGHV3-30*01	91.8	Hu_IGHV3-30*01	87.5	H4	8	H4-8-1	9	RDNSKNTI	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV1-47*02	97.1	Hu_IGLV1-47*02	92.3	L1	13	L1-13-*	-1	SGSSSNIGNNYVY	BBBAAABLABBBB
L	lambda	Homo.sapiens	Hu_IGLV1-47*02	97.1	Hu_IGLV1-47*02	75.0	L2	8	L2-8-*	-1	YWNDQRPS	BLLLBBBB
L	lambda	Homo.sapiens	Hu_IGLV1-47*02	97.1	Hu_IGLV1-47*02	100.0	L3	11	L3-11-1	10	AAWDDSLSGAV	BBBBAAALBBB
L	lambda	Homo.sapiens	Hu_IGLV1-47*02	97.1	Hu_IGLV1-47*02	100.0	L4	6	L4-6-3	28	KSGTSA	BAAABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022