PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5YSL

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV1S81*02	83.6	Mo_IGHV1S81*02	84.6	H1	13	H1-13-1	10	EASGYTFTSYWIH	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV1S81*02	83.6	Mo_IGHV1S81*02	80.0	H2	10	H2-10-1	10	EINTSSGRTN	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV1S81*02	83.6	Mo_IGHV1S81*02	100.0	H3	12	H3-12-*	-1	AREGFGNQSLDY	BBBBLBBLBBAB
A	heavy	Mus.musculus	Mo_IGHV1S81*02	83.6	Mo_IGHV1S81*02	87.5	H4	8	H4-8-1	8	VDKTSSTA	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV4-74*01	92.8	Mo_IGKV4-74*01	100.0	L1	12	L1-12-1	10	TASSSVSsSYLH	BBABBBBAAABB
B	kappa	Mus.musculus	Mo_IGKV4-74*01	92.8	Mo_IGKV4-74*01	75.0	L2	8	L2-8-1	10	YSTYNLAG	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV4-74*01	92.8	Mo_IGKV4-74*01	75.0	L3	9	L3-9-cis7-1	10	QQYHRSPWT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV4-74*01	92.8	Mo_IGKV4-74*01	100.0	L4	6	L4-6-1	15	GSGTSY	EBEABB
C	heavy	Mus.musculus	Mo_IGHV1S81*02	83.6	Mo_IGHV1S81*02	84.6	H1	13	H1-13-1	7	EASGYTFTSYWIH	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV1S81*02	83.6	Mo_IGHV1S81*02	80.0	H2	10	H2-10-1	10	EINTSSGRTN	BBBAAALBBB
C	heavy	Mus.musculus	Mo_IGHV1S81*02	83.6	Mo_IGHV1S81*02	100.0	H3	12	H3-12-*	-1	AREGFGNQSLDY	BBBBLBLLBBAB
C	heavy	Mus.musculus	Mo_IGHV1S81*02	83.6	Mo_IGHV1S81*02	87.5	H4	8	H4-8-1	11	VDKTSSTA	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV4-74*01	92.8	Mo_IGKV4-74*01	100.0	L1	12	L1-12-1	10	TASSSVSsSYLH	BBABBBBAAABB
D	kappa	Mus.musculus	Mo_IGKV4-74*01	92.8	Mo_IGKV4-74*01	75.0	L2	8	L2-8-1	13	YSTYNLAG	BLLABBBB
D	kappa	Mus.musculus	Mo_IGKV4-74*01	92.8	Mo_IGKV4-74*01	75.0	L3	9	L3-9-cis7-1	13	QQYHRSPWT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV4-74*01	92.8	Mo_IGKV4-74*01	100.0	L4	6	L4-6-1	11	GSGTSY	EBEABB
E	heavy	Mus.musculus	Mo_IGHV1S81*02	83.6	Mo_IGHV1S81*02	84.6	H1	13	H1-13-1	11	EASGYTFTSYWIH	BBELBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV1S81*02	83.6	Mo_IGHV1S81*02	80.0	H2	10	H2-10-1	10	EINTSSGRTN	BBBAAALBBB
E	heavy	Mus.musculus	Mo_IGHV1S81*02	83.6	Mo_IGHV1S81*02	100.0	H3	12	H3-12-*	-1	AREGFGNQSLDY	BBBBEBLLBBAB
E	heavy	Mus.musculus	Mo_IGHV1S81*02	83.6	Mo_IGHV1S81*02	87.5	H4	8	H4-8-1	15	VDKTSSTA	BBAAALBB
F	kappa	Mus.musculus	Mo_IGKV4-74*01	92.8	Mo_IGKV4-74*01	100.0	L1	12	L1-12-1	10	TASSSVSsSYLH	BBABBBBAAABB
F	kappa	Mus.musculus	Mo_IGKV4-74*01	92.8	Mo_IGKV4-74*01	75.0	L2	8	L2-8-1	12	YSTYNLAG	BLEABBBB
F	kappa	Mus.musculus	Mo_IGKV4-74*01	92.8	Mo_IGKV4-74*01	75.0	L3	9	L3-9-cis7-1	12	QQYHRSPWT	BBAABBbBB
F	kappa	Mus.musculus	Mo_IGKV4-74*01	92.8	Mo_IGKV4-74*01	100.0	L4	6	L4-6-1	9	GSGTSY	EBEABB
G	heavy	Mus.musculus	Mo_IGHV1S81*02	83.6	Mo_IGHV1S81*02	84.6	H1	13	H1-13-1	11	EASGYTFTSYWIH	BBBLBBAAABBBB
G	heavy	Mus.musculus	Mo_IGHV1S81*02	83.6	Mo_IGHV1S81*02	80.0	H2	10	H2-10-1	12	EINTSSGRTN	BBBAAALBBB
G	heavy	Mus.musculus	Mo_IGHV1S81*02	83.6	Mo_IGHV1S81*02	100.0	H3	12	H3-12-*	-1	AREGFGNQSLDY	BBBALBLLBBAB
G	heavy	Mus.musculus	Mo_IGHV1S81*02	83.6	Mo_IGHV1S81*02	87.5	H4	8	H4-8-1	12	VDKTSSTA	BBAAALBB
H	kappa	Mus.musculus	Mo_IGKV4-74*01	92.8	Mo_IGKV4-74*01	100.0	L1	12	L1-12-1	9	TASSSVSsSYLH	BBABBBBAAABB
H	kappa	Mus.musculus	Mo_IGKV4-74*01	92.8	Mo_IGKV4-74*01	75.0	L2	8	L2-8-1	11	YSTYNLAG	BLEABBBB
H	kappa	Mus.musculus	Mo_IGKV4-74*01	92.8	Mo_IGKV4-74*01	75.0	L3	9	L3-9-cis7-1	11	QQYHRSPWT	BBAABBbBB
H	kappa	Mus.musculus	Mo_IGKV4-74*01	92.8	Mo_IGKV4-74*01	100.0	L4	6	L4-6-1	9	GSGTSY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022