PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5YE4

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV9-2-1*01	98.6	Mo_IGHV9-2-1*01	100.0	H1	13	H1-13-1	9	KASGYTFTDYSMH	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV9-2-1*01	98.6	Mo_IGHV9-2-1*01	100.0	H2	10	H2-10-1	13	WINTETGEPT	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV9-2-1*01	98.6	Mo_IGHV9-2-1*01	50.0	H3	4	H3-4-*	-1	GRDY
A	heavy	Mus.musculus	Mo_IGHV9-2-1*01	98.6	Mo_IGHV9-2-1*01	87.5	H4	8	H4-8-1	6	LETSATTA	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV19-93*01	95.7	Mo_IGKV19-93*01	81.8	L1	11	L1-11-2	3	RASQDINNYIA	BBABBALLBBB
B	kappa	Mus.musculus	Mo_IGKV19-93*01	95.7	Mo_IGKV19-93*01	87.5	L2	8	L2-8-1	4	YYTSTLQP	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV19-93*01	95.7	Mo_IGKV19-93*01	85.7	L3	8	L3-8-1	6	LQYDNLRT	BBAABEBB
B	kappa	Mus.musculus	Mo_IGKV19-93*01	95.7	Mo_IGKV19-93*01	100.0	L4	6	L4-6-1	8	GSGRDY	EBEABB
C	heavy	Mus.musculus	Mo_IGHV9-2-1*01	98.6	Mo_IGHV9-2-1*01	100.0	H1	13	H1-13-1	10	KASGYTFTDYSMH	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV9-2-1*01	98.6	Mo_IGHV9-2-1*01	100.0	H2	10	H2-10-1	14	WINTETGEPT	BBBAAALBBB
C	heavy	Mus.musculus	Mo_IGHV9-2-1*01	98.6	Mo_IGHV9-2-1*01	50.0	H3	4	H3-4-*	-1	GRDY
C	heavy	Mus.musculus	Mo_IGHV9-2-1*01	98.6	Mo_IGHV9-2-1*01	87.5	H4	8	H4-8-1	7	LETSATTA	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV19-93*01	95.7	Mo_IGKV19-93*01	81.8	L1	11	L1-11-2	5	RASQDINNYIA	BBABBALLBBB
D	kappa	Mus.musculus	Mo_IGKV19-93*01	95.7	Mo_IGKV19-93*01	87.5	L2	8	L2-8-1	4	YYTSTLQP	BLLABBBB
D	kappa	Mus.musculus	Mo_IGKV19-93*01	95.7	Mo_IGKV19-93*01	85.7	L3	8	L3-8-1	8	LQYDNLRT	BBAABEBB
D	kappa	Mus.musculus	Mo_IGKV19-93*01	95.7	Mo_IGKV19-93*01	100.0	L4	6	L4-6-1	9	GSGRDY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022