PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5Y2K

#CDRs = 8; #Clusters = 11.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.2	Hu_IGHV3-30*01	76.9	H1	13	H1-13-1	9	EASGFTSSAYAMH	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.2	Hu_IGHV3-30*01	50.0	H2	10	H2-10-2	14	VITFDGGYQY	BBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.2	Hu_IGHV3-30*01	100.0	H3	21	H3-21-*	-1	ARDPLTKllpfdwvSGGYFDY
A	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.2	Hu_IGHV3-30*01	75.0	H4	8	H4-8-1	12	RDISRNTL	BBAAALBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L1	11	L1-11-3	3	SGDKLGDKYAC	BBBLAAABBBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L2	8	L2-8-1	13	YQDSKRPS	BLLABBBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	87.5	L3	9	L3-9-4	26	QAWDSSTVV	BBBBEABBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	12	NSGNTA	BBEABB
C	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.2	Hu_IGHV3-30*01	76.9	H1	13	H1-13-1	8	EASGFTSSAYAMH	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.2	Hu_IGHV3-30*01	50.0	H2	10	H2-10-*	-1	VITFDGGYQY	BBBAAELBBB
C	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.2	Hu_IGHV3-30*01	100.0	H3	21	H3-21-*	-1	ARDPLTkllpfdwvSGGYFDY
C	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.2	Hu_IGHV3-30*01	75.0	H4	8	H4-8-1	8	RDISRNTL	BBAAALBB
D	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L1	11	L1-11-4	16	SGDKLGDKYAC	BBAAAAABBBB
D	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L2	8	L2-8-1	15	YQDSKRPS	BLLABBBB
D	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	87.5	L3	9	L3-9-4	30	QAWDSSTVV	BBBBEABBB
D	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	11	NSGNTA	BBEABB
E	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.2	Hu_IGHV3-30*01	76.9	H1	13	H1-13-1	7	EASGFTSSAYAMH	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.2	Hu_IGHV3-30*01	50.0	H2	10	H2-10-2	8	VITFDGGYQY	BBBAALABBB
E	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.2	Hu_IGHV3-30*01	100.0	H3	21	H3-21-*	-1	ARDPLTKllpfdwvSGGYFDY
E	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.2	Hu_IGHV3-30*01	75.0	H4	8	H4-8-1	11	RDISRNTL	BBAAALBB
F	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L1	11	L1-11-3	6	SGDKLGDKYAC	BBBLAAABBBB
F	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L2	8	L2-8-1	8	YQDSKRPS	BLLABBBB
F	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	87.5	L3	9	L3-9-4	24	QAWDSSTVV	BBBBEABBB
F	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	15	NSGNTA	BBEABB
G	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.2	Hu_IGHV3-30*01	76.9	H1	13	H1-13-1	8	EASGFTSSAYAMH	BBBLBBAAABBBB
G	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.2	Hu_IGHV3-30*01	50.0	H2	10	H2-10-2	11	VITFDGGYQY	BBBAALABBB
G	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.2	Hu_IGHV3-30*01	100.0	H3	21	H3-21-*	-1	ARDPLTKllpfdwvSGGYFDY
G	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.2	Hu_IGHV3-30*01	75.0	H4	8	H4-8-*	-1	RDISRNTL	BBAAALBB
H	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L1	11	L1-11-3	7	SGDKLGDKYAC	BBBLAAABBBB
H	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L2	8	L2-8-1	15	YQDSKRPS	BLLABBBB
H	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	87.5	L3	9	L3-9-4	27	QAWDSSTVV	BBBBEABBB
H	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	16	NSGNTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022