PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5XRQ

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV1-69*05	83.6	Hu_IGHV1-69*05	76.9	H1	13	H1-13-*	-1	KASGDTFSSYSIT	BBBBEAAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV1-69*05	83.6	Hu_IGHV1-69*05	70.0	H2	10	H2-10-1	15	GIFPIFGSTN	BBBAAALBBB
A	heavy	Homo.sapiens	Hu_IGHV1-69*05	83.6	Hu_IGHV1-69*05	100.0	H3	20	H3-20-*	-1	ARGASKvepaapAYSDAFDM
A	heavy	Homo.sapiens	Hu_IGHV1-69*05	83.6	Hu_IGHV1-69*05	50.0	H4	8	H4-8-1	14	TDDSSRTV	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	83.3	L1	12	L1-12-1	10	RTSQGVSsSYLA	BBABBBBAAABB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	75.0	L2	8	L2-8-1	17	SGSSSRAT	BLEABBBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	71.4	L3	8	L3-8-3	9	QQYATSPT	BBAABBBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	83.3	L4	6	L4-6-1	13	GSGRDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV1-69*05	83.6	Hu_IGHV1-69*05	76.9	H1	13	H1-13-*	-1	KASGDTFSSYSIT	BBAEAAAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*05	83.6	Hu_IGHV1-69*05	70.0	H2	10	H2-10-1	13	GIFPIFGSTN	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*05	83.6	Hu_IGHV1-69*05	100.0	H3	20	H3-20-*	-1	ARGASKvepaapAYSDAFDM
H	heavy	Homo.sapiens	Hu_IGHV1-69*05	83.6	Hu_IGHV1-69*05	50.0	H4	8	H4-8-1	17	TDDSSRTV	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	83.3	L1	12	L1-12-1	8	RTSQGVSsSYLA	BBABBBBAAABB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	75.0	L2	8	L2-8-1	13	SGSSSRAT	BLEABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	71.4	L3	8	L3-8-*	-1	QQYATSPT	BBAAABBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	83.3	L4	6	L4-6-1	12	GSGRDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022