PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5XMH

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	91.7	L1	12	L1-12-1	9	RASQSISsSYLA	BBABBBBAAABB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	8	YGASTRAT	BLLABBBB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	100.0	L3	9	L3-9-cis7-1	12	QQYGSSPYT	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV1-69*01	93.2	Hu_IGHV1-69*01	92.3	H1	13	H1-13-*	-1	KASGGTFSSYPIS	BBBBBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV1-69*01	93.2	Hu_IGHV1-69*01	90.0	H2	10	H2-10-1	12	GIIPLFGTAN	BBBAAALBBB
D	heavy	Homo.sapiens	Hu_IGHV1-69*01	93.2	Hu_IGHV1-69*01	100.0	H3	15	H3-15-*	-1	ARGIASaGTPDYFFY
D	heavy	Homo.sapiens	Hu_IGHV1-69*01	93.2	Hu_IGHV1-69*01	87.5	H4	8	H4-8-1	12	ADESTRTA	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*01	93.2	Hu_IGHV1-69*01	92.3	H1	13	H1-13-1	22	KASGGTFSSYPIS	BBBEBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*01	93.2	Hu_IGHV1-69*01	90.0	H2	10	H2-10-1	17	GIIPLFGTAN	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*01	93.2	Hu_IGHV1-69*01	100.0	H3	15	H3-15-*	-1	ARGIASaGTPDYFFY
H	heavy	Homo.sapiens	Hu_IGHV1-69*01	93.2	Hu_IGHV1-69*01	87.5	H4	8	H4-8-1	12	ADESTRTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	91.7	L1	12	L1-12-1	9	RASQSISsSYLA	BBABBBBAAABB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	8	YGASTRAT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	100.0	L3	9	L3-9-cis7-1	8	QQYGSSPYT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.6	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022