PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5XCR

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV9-4*02	91.8	Mo_IGHV9-4*02	100.0	H1	13	H1-13-1	9	KASGYTFTTAGMQ	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV9-4*02	91.8	Mo_IGHV9-4*02	90.0	H2	10	H2-10-1	13	WINTRSGVPK	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV9-4*02	91.8	Mo_IGHV9-4*02	100.0	H3	9	H3-9-*	-1	AREGPGFVY	BBBebEBAB
A	heavy	Mus.musculus	Mo_IGHV9-4*02	91.8	Mo_IGHV9-4*02	87.5	H4	8	H4-8-1	9	LETSASIA	BBAAALBB
B	lambda	Mus.musculus	Mo_IGLV1*01	95.6	Mo_IGLV1*01	100.0	L1	14	L1-14-1	6	RSSTGAVTtSNYAN	BBAAEBBBAAALBB
B	lambda	Mus.musculus	Mo_IGLV1*01	95.6	Mo_IGLV1*01	75.0	L2	8	L2-8-1	8	VGTNNRVP	BLEABBBB
B	lambda	Mus.musculus	Mo_IGLV1*01	95.6	Mo_IGLV1*01	87.5	L3	9	L3-9-4	7	ALWYSNHWV	BBBBEABBB
B	lambda	Mus.musculus	Mo_IGLV1*01	95.6	Mo_IGLV1*01	83.3	L4	6	L4-6-*	-1	LIEDKA	BBLLBB
D	heavy	Mus.musculus	Mo_IGHV9-4*02	91.8	Mo_IGHV9-4*02	100.0	H1	13	H1-13-1	10	KASGYTFTTAGMQ	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV9-4*02	91.8	Mo_IGHV9-4*02	90.0	H2	10	H2-10-1	13	WINTRSGVPK	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV9-4*02	91.8	Mo_IGHV9-4*02	100.0	H3	9	H3-9-*	-1	AREGPGFVY	BBBebEBAB
D	heavy	Mus.musculus	Mo_IGHV9-4*02	91.8	Mo_IGHV9-4*02	87.5	H4	8	H4-8-1	7	LETSASIA	BBAAALBB
E	lambda	Mus.musculus	Mo_IGLV1*01	95.6	Mo_IGLV1*01	100.0	L1	14	L1-14-1	6	RSSTGAVTtSNYAN	BBAAEBBBAAALBB
E	lambda	Mus.musculus	Mo_IGLV1*01	95.6	Mo_IGLV1*01	75.0	L2	8	L2-8-1	8	VGTNNRVP	BLEABBBB
E	lambda	Mus.musculus	Mo_IGLV1*01	95.6	Mo_IGLV1*01	87.5	L3	9	L3-9-4	8	ALWYSNHWV	BBBBLABBB
E	lambda	Mus.musculus	Mo_IGLV1*01	95.6	Mo_IGLV1*01	83.3	L4	6	L4-6-*	-1	LIEDKA	BBLLBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022