PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5XBM

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV5-39*01	100.0	Mo_IGKV5-39*01	100.0	L1	11	L1-11-*	-1	RASQSISDYLH	BBABALEBBBA
A	kappa	Mus.musculus	Mo_IGKV5-39*01	100.0	CDRLenMismatch	-1.0	L2	6	L2-6-*	-1	KYQSIS
A	kappa	Mus.musculus	Mo_IGKV5-39*01	100.0	Mo_IGKV5-39*01	100.0	L3	9	L3-9-cis7-*	-1	QNGHSFPFT	BBABBBbEE
A	kappa	Mus.musculus	Mo_IGKV5-39*01	100.0	Mo_IGKV5-39*01	100.0	L4	6	L4-6-1	21	GSGSDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1-42*01	94.5	Mo_IGHV1-42*01	84.6	H1	13	H1-13-*	-1	MASGYSFTGYNMN	LBBLBBAAABALB
B	heavy	Mus.musculus	Mo_IGHV1-42*01	94.5	Mo_IGHV1-42*01	40.0	H2	10	H2-10-*	-1	NIDPYYGDTR	BBBAAALBAB
B	heavy	Mus.musculus	Mo_IGHV1-42*01	94.5	Mo_IGHV1-42*01	100.0	H3	15	H3-15-*	-1	ARSRGSTsYFYGMDY
B	heavy	Mus.musculus	Mo_IGHV1-42*01	94.5	Mo_IGHV1-42*01	100.0	H4	8	H4-8-*	-1	VDKSSSTA	BAEBLLBB
D	kappa	Mus.musculus	Mo_IGKV5-39*01	100.0	Mo_IGKV5-39*01	100.0	L1	11	L1-11-*	-1	RASQSISDYLH	BBABBAEABBA
D	kappa	Mus.musculus	Mo_IGKV5-39*01	100.0	CDRLenMismatch	-1.0	L2	6	L2-6-*	-1	KYQSIS
D	kappa	Mus.musculus	Mo_IGKV5-39*01	100.0	Mo_IGKV5-39*01	100.0	L3	9	L3-9-cis7-1	21	QNGHSFPFT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV5-39*01	100.0	Mo_IGKV5-39*01	100.0	L4	6	L4-6-*	-1	GSGSDF	EBEBLB
E	heavy	Mus.musculus	Mo_IGHV1-42*01	94.5	Mo_IGHV1-42*01	84.6	H1	13	H1-13-*	-1	MASGYSFTGYNMN	LBBLBBBELBALB
E	heavy	Mus.musculus	Mo_IGHV1-42*01	94.5	Mo_IGHV1-42*01	40.0	H2	10	H2-10-*	-1	NIDPYYGDTR	BALAAALBBB
E	heavy	Mus.musculus	Mo_IGHV1-42*01	94.5	Mo_IGHV1-42*01	100.0	H3	15	H3-15-*	-1	ARSRGSTsYFYGMDY
E	heavy	Mus.musculus	Mo_IGHV1-42*01	94.5	Mo_IGHV1-42*01	100.0	H4	8	H4-8-*	-1	VDKSSSTA	BALBALEB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022