PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5X8L

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	18	AASGFTFSDSWIH	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	70.0	H2	10	H2-10-*	-1	WISPYGGSTY	BBBAABABBB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	11	H3-11-*	-1	ARRHWPGGFDY	BBBBAAEEBAB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	6	ADTSKNTA	BBAAALBB
G	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	16	AASGFTFSDSWIH	BBBLBBAAABBBB
G	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	70.0	H2	10	H2-10-1	7	WISPYGGSTY	BBBAAALBBB
G	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	11	H3-11-*	-1	ARRHWPGGFDY	BBBBAAEEBAB
G	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	10	ADTSKNTA	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	16	AASGFTFSDSWIH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	70.0	H2	10	H2-10-6	10	WISPYGGSTY	BBBABLLBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	11	H3-11-*	-1	ARRHWPGGFDY	BBBBAAEEBAB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	8	ADTSKNTA	BBAAALBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	17	AASGFTFSDSWIH	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	70.0	H2	10	H2-10-1	9	WISPYGGSTY	BBBAAALBBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	11	H3-11-*	-1	ARRHWPGGFDY	BBBBAAEEBAB
J	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	9	ADTSKNTA	BBAAALBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	19	RASQDVSTAVA	BBABBAEAABB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	17	YSASFLYS	BLLABBBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	42.9	L3	9	L3-9-cis7-1	13	QQYLYHPAT	BBAABBbBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	23	GSGTDF	EBEABB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	19	RASQDVSTAVA	BBABBAEAABB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	10	YSASFLYS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	42.9	L3	9	L3-9-cis7-1	13	QQYLYHPAT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	19	RASQDVSTAVA	BBABBAEAABB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	16	YSASFLYS	BLLABBBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	42.9	L3	9	L3-9-cis7-1	16	QQYLYHPAT	BBAABBbBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	23	GSGTDF	EBEABB
N	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	11	RASQDVSTAVA	BBABBAEABBB
N	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	18	YSASFLYS	BLLABBBB
N	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	42.9	L3	9	L3-9-cis7-1	13	QQYLYHPAT	BBAABBbBB
N	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	15	GSGTDF	EBEABB
O	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	13	RASQDVSTAVA	BBABBAEABBB
O	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	12	YSASFLYS	BLLABBBB
O	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	42.9	L3	9	L3-9-cis7-1	15	QQYLYHPAT	BBAABBbBB
O	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	13	GSGTDF	EBEABB
S	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	18	AASGFTFSDSWIH	BBBLBBAAABBBB
S	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	70.0	H2	10	H2-10-6	11	WISPYGGSTY	BBBABLLBBB
S	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	11	H3-11-*	-1	ARRHWPGGFDY	BBBBAAEEBAB
S	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	7	ADTSKNTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022