PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5WOB

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
I	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Mo_IGHV5-12-1*01	61.5	H1	13	H1-13-1	15	AASGFNVSSYSIH	BBBLBBAAABBBB
I	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Mo_IGHV5-12-1*01	60.0	H2	10	H2-10-1	14	SISSYYGSTS	BBBAAALBBB
I	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	100.0	H3	22	H3-22-*	-1	ARDRvmyywsfsKYGYPYGMDY
I	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	62.5	H4	8	H4-8-*	-1	ADTskNTA
J	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	72.7	L1	11	L1-11-*	-1	RAsqsVSSAVA
J	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	50.0	L2	8	L2-8-*	-1	YSTSSLYS	ABAABBBB
J	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	42.9	L3	10	L3-10-*	-1	QQSSpSFLIT	BBBBBLLBBB
J	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-*	-1	RSgTDF
K	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Mo_IGHV5-12-1*01	61.5	H1	13	H1-13-1	18	AASGFNVSSYSIH	BBBLBBAAABBBB
K	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Mo_IGHV5-12-1*01	60.0	H2	10	H2-10-1	13	SISSYYGSTS	BBBAAALBBB
K	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	100.0	H3	22	H3-22-*	-1	ARDRvmyywsfsKYGYPYGMDY
K	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	62.5	H4	8	H4-8-*	-1	ADTskNTA
L	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	72.7	L1	11	L1-11-*	-1	RAsqsVSSAVA
L	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	50.0	L2	8	L2-8-*	-1	YSTSSLYS	ABAABBBB
L	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	42.9	L3	10	L3-10-*	-1	QQSSpSFLIT	BBBBBLLBBB
L	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-*	-1	RSgTDF
M	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Mo_IGHV5-12-1*01	61.5	H1	13	H1-13-1	15	AASGFNVSSYSIH	BBBLBBAAABBBB
M	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Mo_IGHV5-12-1*01	60.0	H2	10	H2-10-1	13	SISSYYGSTS	BBBAAALBBB
M	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	100.0	H3	22	H3-22-*	-1	ARDRvmyywsfsKYGYPYGMDY
M	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	62.5	H4	8	H4-8-*	-1	ADTskNTA
N	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	72.7	L1	11	L1-11-*	-1	RAsqsVSSAVA
N	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	50.0	L2	8	L2-8-*	-1	YSTSSLYS	ABAABBBB
N	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	42.9	L3	10	L3-10-*	-1	QQSSpSFLIT	BBBBBLLBBB
N	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	15	RSGTDF	BBEABB
O	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Mo_IGHV5-12-1*01	61.5	H1	13	H1-13-1	16	AASGFNVSSYSIH	BBBLBBAAABBBB
O	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Mo_IGHV5-12-1*01	60.0	H2	10	H2-10-1	14	SISSYYGSTS	BBBAAALBBB
O	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	100.0	H3	22	H3-22-*	-1	ARDRvmyywsfsKYGYPYGMDY
O	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	62.5	H4	8	H4-8-*	-1	ADTskNTA
P	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	72.7	L1	11	L1-11-*	-1	RAsqsVSSAVA
P	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	50.0	L2	8	L2-8-*	-1	YSTSSLYS	ABAABBBB
P	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	42.9	L3	10	L3-10-*	-1	QQSSpSFLIT	BBBBBLLBBB
P	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	32	RSGTDF	BAEABB
Q	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Mo_IGHV5-12-1*01	61.5	H1	13	H1-13-1	16	AASGFNVSSYSIH	BBBLBBAAABBBB
Q	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Mo_IGHV5-12-1*01	60.0	H2	10	H2-10-*	-1	SISSYYGSTs
Q	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	100.0	H3	22	H3-22-*	-1	ARDRvmyywsfsKYGYPYGMDY
Q	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	62.5	H4	8	H4-8-*	-1	ADTskNTA
R	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	72.7	L1	11	L1-11-*	-1	RAsqsVSSAVA
R	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	50.0	L2	8	L2-8-*	-1	YSTSSLYS	ABAABBBB
R	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	42.9	L3	10	L3-10-*	-1	QQSSpSFLIT	BBBBBLLBBB
R	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-*	-1	RSGTDF	BALABB
S	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Mo_IGHV5-12-1*01	61.5	H1	13	H1-13-1	16	AASGFNVSSYSIH	BBBLBBAAABBBB
S	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Mo_IGHV5-12-1*01	60.0	H2	10	H2-10-1	14	SISSYYGSTS	BBBAAALBBB
S	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	100.0	H3	22	H3-22-*	-1	ARDRvmyywsfsKYGYPYGMDY
S	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	62.5	H4	8	H4-8-*	-1	ADTskNTA
T	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	72.7	L1	11	L1-11-*	-1	RASQSVSSAVA	BBBABLBABBB
T	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	50.0	L2	8	L2-8-*	-1	YSTSSLYS	ABAABBBB
T	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	42.9	L3	10	L3-10-*	-1	QQSSpSFLIT	BBBBBLLBBB
T	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-*	-1	RSgTDF
U	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Mo_IGHV5-12-1*01	61.5	H1	13	H1-13-1	15	AASGFNVSSYSIH	BBBLBBAAABBBB
U	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Mo_IGHV5-12-1*01	60.0	H2	10	H2-10-1	12	SISSYYGSTS	BBBAAALBBB
U	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	100.0	H3	22	H3-22-*	-1	ARDRvmyywsfsKYGYPYGMDY
U	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	62.5	H4	8	H4-8-*	-1	ADTskNTA
V	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	72.7	L1	11	L1-11-*	-1	RAsqsVSSAVA
V	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	50.0	L2	8	L2-8-*	-1	YSTSSLYS	ABAABBBB
V	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	42.9	L3	10	L3-10-*	-1	QQSSpSFLIT	BBBBBLLBBB
V	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	32	RSGTDF	BBEABB
W	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Mo_IGHV5-12-1*01	61.5	H1	13	H1-13-1	16	AASGFNVSSYSIH	BBBLBBAAABBBB
W	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Mo_IGHV5-12-1*01	60.0	H2	10	H2-10-1	15	SISSYYGSTS	BBBAAALBBB
W	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	100.0	H3	22	H3-22-*	-1	ARDRvmyywsfsKYGYPYGMDY
W	heavy	Mus.musculoides	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	62.5	H4	8	H4-8-*	-1	ADTskNTA
X	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	72.7	L1	11	L1-11-*	-1	RASQSVSSAVA	BBBLBABABBB
X	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	50.0	L2	8	L2-8-*	-1	YSTSSLYS	ABAABBBB
X	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	42.9	L3	10	L3-10-*	-1	QQSSpSFLIT	BBBBBLLBBB
X	kappa	Mus.musculoides	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-*	-1	RSGTDF	BAELBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022