PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5WK3

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
P	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	70.6	L1	17	L1-17-1	11	KSSQSVllspwnSNQLA	BBABBABBAAALBBBBB
P	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	87.5	L2	8	L2-8-1	5	YGASTRES	BLLABBBB
P	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	71.4	L3	9	L3-9-cis7-1	21	QQYYLIPST	BBAABBbBB
P	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
Q	heavy	Homo.sapiens	Hu_IGHV5-51*01	100.0	Hu_IGHV5-51*01	100.0	H1	13	H1-13-1	7	KGSGYSFTSYWIG	BBBLBBAAABBBB
Q	heavy	Homo.sapiens	Hu_IGHV5-51*01	100.0	Hu_IGHV5-51*01	80.0	H2	10	H2-10-1	12	IIDPSDSDTR	BBBAAALBBB
Q	heavy	Homo.sapiens	Hu_IGHV5-51*01	100.0	Hu_IGHV5-51*01	100.0	H3	14	H3-14-*	-1	ARVGPADVWDSFDY	BBBBABBaBBBBAB
Q	heavy	Homo.sapiens	Hu_IGHV5-51*01	100.0	Hu_IGHV5-51*01	100.0	H4	8	H4-8-1	9	ADKSISTA	BBAAALBB
R	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	70.6	L1	17	L1-17-1	17	KSSQSVllspwnSNQLA	BBABBABBAAABBBBBB
R	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	87.5	L2	8	L2-8-1	6	YGASTRES	BLLABBBB
R	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	71.4	L3	9	L3-9-cis7-1	20	QQYYLIPST	BBAABBbBB
R	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
S	heavy	Homo.sapiens	Hu_IGHV5-51*01	100.0	Hu_IGHV5-51*01	100.0	H1	13	H1-13-1	7	KGSGYSFTSYWIG	BBBLBBAAABBBB
S	heavy	Homo.sapiens	Hu_IGHV5-51*01	100.0	Hu_IGHV5-51*01	80.0	H2	10	H2-10-1	10	IIDPSDSDTR	BBBAAALBBB
S	heavy	Homo.sapiens	Hu_IGHV5-51*01	100.0	Hu_IGHV5-51*01	100.0	H3	14	H3-14-*	-1	ARVGPADVWDSFDY	BBBBABBaBBBBAB
S	heavy	Homo.sapiens	Hu_IGHV5-51*01	100.0	Hu_IGHV5-51*01	100.0	H4	8	H4-8-1	9	ADKSISTA	BBAAALBB
T	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	70.6	L1	17	L1-17-1	11	KSSQSVllspwnSNQLA	BBABBABBAAALBBBBB
T	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	87.5	L2	8	L2-8-1	5	YGASTRES	BLLABBBB
T	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	71.4	L3	9	L3-9-cis7-1	20	QQYYLIPST	BBAABBbBB
T	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
U	heavy	Homo.sapiens	Hu_IGHV5-51*01	100.0	Hu_IGHV5-51*01	100.0	H1	13	H1-13-1	7	KGSGYSFTSYWIG	BBBLBBAAABBBB
U	heavy	Homo.sapiens	Hu_IGHV5-51*01	100.0	Hu_IGHV5-51*01	80.0	H2	10	H2-10-1	11	IIDPSDSDTR	BBBAAALBBB
U	heavy	Homo.sapiens	Hu_IGHV5-51*01	100.0	Hu_IGHV5-51*01	100.0	H3	14	H3-14-*	-1	ARVGPADVWDSFDY	BBBBABBaBBBBAB
U	heavy	Homo.sapiens	Hu_IGHV5-51*01	100.0	Hu_IGHV5-51*01	100.0	H4	8	H4-8-1	9	ADKSISTA	BBAAALBB
V	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	70.6	L1	17	L1-17-1	14	KSSQSVllspwnSNQLA	BBABBABBAAALBBBBB
V	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	87.5	L2	8	L2-8-1	5	YGASTRES	BLLABBBB
V	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	71.4	L3	9	L3-9-cis7-1	20	QQYYLIPST	BBAABBbBB
V	kappa	Homo.sapiens	Hu_IGKV4-1*01	100.0	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
W	heavy	Homo.sapiens	Hu_IGHV5-51*01	100.0	Hu_IGHV5-51*01	100.0	H1	13	H1-13-1	5	KGSGYSFTSYWIG	BBBLBBAAABBBB
W	heavy	Homo.sapiens	Hu_IGHV5-51*01	100.0	Hu_IGHV5-51*01	80.0	H2	10	H2-10-1	11	IIDPSDSDTR	BBBAAALBBB
W	heavy	Homo.sapiens	Hu_IGHV5-51*01	100.0	Hu_IGHV5-51*01	100.0	H3	14	H3-14-*	-1	ARVGPADVWDSFDY	BBBBABBaBBBBAB
W	heavy	Homo.sapiens	Hu_IGHV5-51*01	100.0	Hu_IGHV5-51*01	100.0	H4	8	H4-8-1	7	ADKSISTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022