PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5WDU

#CDRs = 8; #Clusters = 19.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	EBBBABBBBBB
B	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	62.5	L2	8	L2-8-1	17	YNNNDRPS	BLEABBBB
B	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	33.3	L3	12	L3-12-*	-1	HIWDSRRpTNWV
B	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	0.0	L4	9	L4-9-*	-1	pgsTFGTTA
C	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	53.8	H1	13	H1-13-1	16	NVSGTLVRDNYWS	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	55.6	H2	9	H2-9-*	-1	YVHDSGDTN	BBBBLLBBB
C	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	50.0	H3	26	H3-26-*	-1	ATTKHGRriygvvafkewfTYFYMDV
C	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	50.0	H4	8	H4-8-1	15	LDKSKNLV	BBAAALBB
D	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	None	-1.0	H1	13	H1-13-1	11	RASGYEFLNCPIN	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	None	-1.0	H2	10	H2-10-6	11	WLKPRGGAVN	BBBABLLBBB
D	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Hu_IGHV1-24*01	0.0	H3	18	H3-18-*	-1	TRGKYCtardYYNWDFEH
D	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Hu_IGHV1-24*01	50.0	H4	8	H4-8-1	9	RDVYSDTA	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	CDRLenMismatch	-1.0	L1	9	L1-9-*	-1	RTSQSGSLA
D	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	Hu_IGKV3D-20*02	50.0	L2	8	L2-8-1	14	YSGSTRAA	BLLABBBB
D	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	Hu_IGKV3D-20*02	0.0	L3	5	L3-5-1	8	QQYEF	BBEAB
D	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	Hu_IGKV3D-20*02	33.3	L4	6	L4-6-2	14	RWGADY	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV1-18*02	62.2	Hu_IGHV1-18*02	53.8	H1	13	H1-13-1	13	KTSGYRFNFYHIN	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-18*02	62.2	Hu_IGHV1-18*02	60.0	H2	10	H2-10-1	16	WISPYSGDKN	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-18*02	62.2	Hu_IGHV1-18*02	0.0	H3	16	H3-16-*	-1	AKGLLRdgSSTWLPYL
H	heavy	Homo.sapiens	Hu_IGHV1-18*02	62.2	Hu_IGHV1-18*02	0.0	H4	16	H4-16-*	-1	TDTevpvtsftSTGAA
I	lambda	Homo.sapiens	Hu_IGLV2-18*02	68.7	Hu_IGLV2-18*02	35.7	L1	14	L1-14-*	-1	TGPNSVcCSHKSIS	BEBAAABaBLBBBB
I	lambda	Homo.sapiens	Hu_IGLV2-18*02	68.7	Hu_IGLV2-18*02	37.5	L2	8	L2-8-1	10	YEDNERAP	BLEABBBB
I	lambda	Homo.sapiens	Hu_IGLV2-18*02	68.7	Hu_IGLV2-18*02	44.4	L3	10	L3-10-*	-1	CSYTHNSGCV	BBBBAABBBB
I	lambda	Homo.sapiens	Hu_IGLV2-18*02	68.7	Hu_IGLV2-18*02	50.0	L4	6	L4-6-*	-1	KSYWSA	BBAABB
K	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	EBBBABBBBBB
K	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	62.5	L2	8	L2-8-1	17	YNNNDRPS	BLEABBBB
K	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	33.3	L3	12	L3-12-*	-1	HIWDSRRpTNWV
K	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	0.0	L4	9	L4-9-*	-1	pgsTFGTTA
L	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	53.8	H1	13	H1-13-1	16	NVSGTLVRDNYWS	BBBLBBAAABBBB
L	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	55.6	H2	9	H2-9-*	-1	YVHDSGDTN	BBBBLLBBB
L	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	50.0	H3	26	H3-26-*	-1	ATTKHGRriygvvafkewfTYFYMDV
L	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	50.0	H4	8	H4-8-1	15	LDKSKNLV	BBAAALBB
M	heavy	Homo.sapiens	Hu_IGHV1-18*02	62.2	Hu_IGHV1-18*02	53.8	H1	13	H1-13-1	13	KTSGYRFNFYHIN	BBBLBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV1-18*02	62.2	Hu_IGHV1-18*02	60.0	H2	10	H2-10-1	16	WISPYSGDKN	BBBAAALBBB
M	heavy	Homo.sapiens	Hu_IGHV1-18*02	62.2	Hu_IGHV1-18*02	0.0	H3	16	H3-16-*	-1	AKGLLRdgSSTWLPYL
M	heavy	Homo.sapiens	Hu_IGHV1-18*02	62.2	Hu_IGHV1-18*02	0.0	H4	16	H4-16-*	-1	TDTevpvtsftSTGAA
N	lambda	Homo.sapiens	Hu_IGLV2-18*02	68.7	Hu_IGLV2-18*02	35.7	L1	14	L1-14-*	-1	TGPNSVcCSHKSIS	BEBAAABaBLBBBB
N	lambda	Homo.sapiens	Hu_IGLV2-18*02	68.7	Hu_IGLV2-18*02	37.5	L2	8	L2-8-1	10	YEDNERAP	BLEABBBB
N	lambda	Homo.sapiens	Hu_IGLV2-18*02	68.7	Hu_IGLV2-18*02	44.4	L3	10	L3-10-*	-1	CSYTHNSGCV	BBBBAABBBB
N	lambda	Homo.sapiens	Hu_IGLV2-18*02	68.7	Hu_IGLV2-18*02	50.0	L4	6	L4-6-*	-1	KSYWSA	BBAABB
O	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	None	-1.0	H1	13	H1-13-1	11	RASGYEFLNCPIN	BBBLBBAAABBBB
O	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	None	-1.0	H2	10	H2-10-6	11	WLKPRGGAVN	BBBABLLBBB
O	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Hu_IGHV1-24*01	0.0	H3	18	H3-18-*	-1	TRGKYCtardYYNWDFEH
O	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Hu_IGHV1-24*01	50.0	H4	8	H4-8-1	10	RDVYSDTA	BBAAALBB
O	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	CDRLenMismatch	-1.0	L1	9	L1-9-*	-1	RTSQSGSLA
O	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	Hu_IGKV3D-20*02	50.0	L2	8	L2-8-1	14	YSGSTRAA	BLLABBBB
O	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	Hu_IGKV3D-20*02	0.0	L3	5	L3-5-1	8	QQYEF	BBEAB
O	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	Hu_IGKV3D-20*02	33.3	L4	6	L4-6-2	14	RWGADY	BBEABB
S	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	EBBBABBBBBB
S	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	62.5	L2	8	L2-8-1	17	YNNNDRPS	BLEABBBB
S	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	33.3	L3	12	L3-12-*	-1	HIWDSRRpTNWV
S	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	0.0	L4	9	L4-9-*	-1	pgsTFGTTA
T	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	53.8	H1	13	H1-13-1	16	NVSGTLVRDNYWS	BBBLBBAAABBBB
T	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	55.6	H2	9	H2-9-*	-1	YVHDSGDTN	BBBBLLBBB
T	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	50.0	H3	26	H3-26-*	-1	ATTKHGRriygvvafkewfTYFYMDV
T	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	50.0	H4	8	H4-8-1	15	LDKSKNLV	BBAAALBB
U	heavy	Homo.sapiens	Hu_IGHV1-18*02	62.2	Hu_IGHV1-18*02	53.8	H1	13	H1-13-1	13	KTSGYRFNFYHIN	BBBLBBAAABBBB
U	heavy	Homo.sapiens	Hu_IGHV1-18*02	62.2	Hu_IGHV1-18*02	60.0	H2	10	H2-10-1	16	WISPYSGDKN	BBBAAALBBB
U	heavy	Homo.sapiens	Hu_IGHV1-18*02	62.2	Hu_IGHV1-18*02	0.0	H3	16	H3-16-*	-1	AKGLLRdgSSTWLPYL
U	heavy	Homo.sapiens	Hu_IGHV1-18*02	62.2	Hu_IGHV1-18*02	0.0	H4	16	H4-16-*	-1	TDTevpvtsftSTGAA
V	lambda	Homo.sapiens	Hu_IGLV2-18*02	68.7	Hu_IGLV2-18*02	35.7	L1	14	L1-14-*	-1	TGPNSVcCSHKSIS	BEBAAABaBLBBBB
V	lambda	Homo.sapiens	Hu_IGLV2-18*02	68.7	Hu_IGLV2-18*02	37.5	L2	8	L2-8-1	10	YEDNERAP	BLEABBBB
V	lambda	Homo.sapiens	Hu_IGLV2-18*02	68.7	Hu_IGLV2-18*02	44.4	L3	10	L3-10-*	-1	CSYTHNSGCV	BBBBAABBBB
V	lambda	Homo.sapiens	Hu_IGLV2-18*02	68.7	Hu_IGLV2-18*02	50.0	L4	6	L4-6-*	-1	KSYWSA	BBAABB
W	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	None	-1.0	H1	13	H1-13-1	11	RASGYEFLNCPIN	BBBLBBAAABBBB
W	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	None	-1.0	H2	10	H2-10-6	11	WLKPRGGAVN	BBBABLLBBB
W	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Hu_IGHV1-24*01	0.0	H3	18	H3-18-*	-1	TRGKYCtardYYNWDFEH
W	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Hu_IGHV1-24*01	50.0	H4	8	H4-8-1	9	RDVYSDTA	BBAAALBB
W	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	CDRLenMismatch	-1.0	L1	9	L1-9-*	-1	RTSQSGSLA
W	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	Hu_IGKV3D-20*02	50.0	L2	8	L2-8-1	14	YSGSTRAA	BLLABBBB
W	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	Hu_IGKV3D-20*02	0.0	L3	5	L3-5-1	8	QQYEF	BBEAB
W	kappa	Homo.sapiens	Hu_IGKV3D-20*02	78.3	Hu_IGKV3D-20*02	33.3	L4	6	L4-6-2	15	RWGADY	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022