PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5W4L

#CDRs = 8; #Clusters = 16.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	heavy	Homo.sapiens	Hu_IGHV1-69*15	90.4	Hu_IGHV1-69*15	61.5	H1	13	H1-13-*	-1	KASGGSFSRYTVN	BBBLBBBEAAABB
B	heavy	Homo.sapiens	Hu_IGHV1-69*15	90.4	Hu_IGHV1-69*15	50.0	H2	10	H2-10-*	-1	RFIPIFNMPD	BBBBEBBBBB
B	heavy	Homo.sapiens	Hu_IGHV1-69*15	90.4	Hu_IGHV1-69*15	50.0	H3	11	H3-11-1	20	ASRQHHEYFQE	BBBBAALBBAB
B	heavy	Homo.sapiens	Hu_IGHV1-69*15	90.4	Hu_IGHV1-69*15	100.0	H4	8	H4-8-1	6	ADESTSTA	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV3D-20*02	95.7	Hu_IGKV3D-20*02	75.0	L1	12	L1-12-*	-1	RASRTVSsSNLA	BBABBBBBBBBB
C	kappa	Homo.sapiens	Hu_IGKV3D-20*02	95.7	Hu_IGKV3D-20*02	87.5	L2	8	L2-8-1	7	YDVSSRAT	BLLABBBB
C	kappa	Homo.sapiens	Hu_IGKV3D-20*02	95.7	Hu_IGKV3D-20*02	28.6	L3	9	L3-9-*	-1	QQYGTSPLT	BBAABBABB
C	kappa	Homo.sapiens	Hu_IGKV3D-20*02	95.7	Hu_IGKV3D-20*02	100.0	L4	6	L4-6-3	16	GSGTDF	EBAABB
D	heavy	Homo.sapiens	Hu_IGHV1-69*15	90.4	Hu_IGHV1-69*15	61.5	H1	13	H1-13-*	-1	KASGGSFSRYTVN	BBBLBBBEAAABB
D	heavy	Homo.sapiens	Hu_IGHV1-69*15	90.4	Hu_IGHV1-69*15	50.0	H2	10	H2-10-*	-1	RFIPIFNMPD	BBBBEAbBBB
D	heavy	Homo.sapiens	Hu_IGHV1-69*15	90.4	Hu_IGHV1-69*15	50.0	H3	11	H3-11-*	-1	ASRQHHEYFQE	BBBBAALALAB
D	heavy	Homo.sapiens	Hu_IGHV1-69*15	90.4	Hu_IGHV1-69*15	100.0	H4	8	H4-8-1	14	ADESTSTA	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV3D-20*02	95.7	Hu_IGKV3D-20*02	75.0	L1	12	L1-12-*	-1	RASRTVSsSNLA	BBAAEBBBBBBB
E	kappa	Homo.sapiens	Hu_IGKV3D-20*02	95.7	Hu_IGKV3D-20*02	87.5	L2	8	L2-8-4	26	YDVSSRAT	BEAABBBB
E	kappa	Homo.sapiens	Hu_IGKV3D-20*02	95.7	Hu_IGKV3D-20*02	28.6	L3	9	L3-9-*	-1	QQYGTSPLT	BBABEABBB
E	kappa	Homo.sapiens	Hu_IGKV3D-20*02	95.7	Hu_IGKV3D-20*02	100.0	L4	6	L4-6-3	32	GSGTDF	EAAABB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	92.3	H1	13	H1-13-1	11	AASGFTFSTYAMS	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	40.0	H2	10	H2-10-2	10	SINNSGRNTF	BBBAALABBB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	100.0	H3	12	H3-12-*	-1	AKDLRLGGGSDY	BBBABBLBBBAB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	92.3	H1	13	H1-13-1	10	AASGFTFSTYAMS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	40.0	H2	10	H2-10-2	10	SINNSGRNTF	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	100.0	H3	12	H3-12-*	-1	AKDLRLGGGSDY	BBBABBLBBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	95.9	Hu_IGHV3-23*04	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
I	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	92.9	L1	14	L1-14-2	9	TGTSSDVGSyNFVS	BBBAAAAAABBBBB
I	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	75.0	L2	8	L2-8-1	9	YEVSERPS	BLLABBBB
I	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	55.6	L3	11	L3-11-*	-1	SSYAGSTTFRV	BBBBEAAAEBB
I	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	100.0	L4	6	L4-6-2	11	KSGNTA	BBEABB
L	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	92.9	L1	14	L1-14-2	10	TGTSSDVGSyNFVS	BBBAAAAAABAABB
L	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	75.0	L2	8	L2-8-1	15	YEVSERPS	BLEABBBB
L	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	55.6	L3	11	L3-11-*	-1	SSYAGSTTFRV	BBBAEAAAEBB
L	lambda	Homo.sapiens	Hu_IGLV2-14*02	98.5	Hu_IGLV2-14*02	100.0	L4	6	L4-6-2	5	KSGNTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022