PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5W0K

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	heavy	Mus.musculus	Mo_IGHV1S78*01	95.1	Mo_IGHV1S78*01	100.0	H1	13	H1-13-1	9	KASGYTFTDYWMH	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV1S78*01	95.1	Mo_IGHV1S78*01	90.0	H2	10	H2-10-1	20	AIDTSDSYTS	BBBAAALBBB
E	heavy	Mus.musculus	Mo_IGHV1S78*01	95.1	Mo_IGHV1S78*01	0.0	H3	9	H3-9-*	-1	ARGLLPFDY	BBABBbBAB
E	heavy	Mus.musculus	Mo_IGHV1S78*01	95.1	Mo_IGHV1S78*01	100.0	H4	8	H4-8-1	10	VDESSSTA	BBAAALBB
F	kappa	Mus.musculus	Mo_IGKV6-15*01	98.6	Mo_IGKV6-15*01	100.0	L1	11	L1-11-1	12	KASQNVGTNVA	BBABBAEABBB
F	kappa	Mus.musculus	Mo_IGKV6-15*01	98.6	Mo_IGKV6-15*01	100.0	L2	8	L2-8-1	11	YSASYRYS	BLLABBBB
F	kappa	Mus.musculus	Mo_IGKV6-15*01	98.6	Mo_IGKV6-15*01	100.0	L3	9	L3-9-cis7-1	12	QQYNSYPYT	BBAABBbBB
F	kappa	Mus.musculus	Mo_IGKV6-15*01	98.6	Mo_IGKV6-15*01	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV1S78*01	95.1	Mo_IGHV1S78*01	100.0	H1	13	H1-13-1	9	KASGYTFTDYWMH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1S78*01	95.1	Mo_IGHV1S78*01	90.0	H2	10	H2-10-3	19	AIDTSDSYTS	BBBBLALBBB
H	heavy	Mus.musculus	Mo_IGHV1S78*01	95.1	Mo_IGHV1S78*01	0.0	H3	9	H3-9-*	-1	ARGLLPFDY	BBBALbBAB
H	heavy	Mus.musculus	Mo_IGHV1S78*01	95.1	Mo_IGHV1S78*01	100.0	H4	8	H4-8-1	10	VDESSSTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV6-15*01	98.6	Mo_IGKV6-15*01	100.0	L1	11	L1-11-1	12	KASQNVGTNVA	BBABBAEABBB
L	kappa	Mus.musculus	Mo_IGKV6-15*01	98.6	Mo_IGKV6-15*01	100.0	L2	8	L2-8-1	11	YSASYRYS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV6-15*01	98.6	Mo_IGKV6-15*01	100.0	L3	9	L3-9-cis7-1	12	QQYNSYPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV6-15*01	98.6	Mo_IGKV6-15*01	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022