PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5VSH

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	Hu_IGHV3-66*01	53.8	H1	13	H1-13-1	6	AASGFTFTDYTMD	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	CDRLenMismatch	-1.0	H2	10	H2-10-1	11	DVNPNSGGSI	BBBAAALBBB
A	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	Hu_IGHV3-66*01	100.0	H3	12	H3-12-*	-1	ARNLGPSFYFDY	BBBBEABBBBAB
A	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	Hu_IGHV3-66*01	75.0	H4	8	H4-8-1	5	VDRSKNTL	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV1D-16*01	94.2	Hu_IGKV1D-16*01	45.5	L1	11	L1-11-1	6	KASQDVSIGVA	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV1D-16*01	94.2	Hu_IGKV1D-16*01	37.5	L2	8	L2-8-1	6	YSASYRYT	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV1D-16*01	94.2	Hu_IGKV1D-16*01	71.4	L3	9	L3-9-cis7-*	-1	QQYYIYPYT	BBAABBaLB
B	kappa	Homo.sapiens	Hu_IGKV1D-16*01	94.2	Hu_IGKV1D-16*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	Hu_IGHV3-66*01	53.8	H1	13	H1-13-1	9	AASGFTFTDYTMD	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	CDRLenMismatch	-1.0	H2	10	H2-10-1	10	DVNPNSGGSI	BBBAAALBBB
C	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	Hu_IGHV3-66*01	100.0	H3	12	H3-12-*	-1	ARNLGPSFYFDY	BBBBEABBBBAB
C	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	Hu_IGHV3-66*01	75.0	H4	8	H4-8-1	5	VDRSKNTL	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV1D-16*01	94.2	Hu_IGKV1D-16*01	45.5	L1	11	L1-11-1	6	KASQDVSIGVA	BBABBAEABBB
D	kappa	Homo.sapiens	Hu_IGKV1D-16*01	94.2	Hu_IGKV1D-16*01	37.5	L2	8	L2-8-1	7	YSASYRYT	BLLABBBB
D	kappa	Homo.sapiens	Hu_IGKV1D-16*01	94.2	Hu_IGKV1D-16*01	71.4	L3	9	L3-9-cis7-*	-1	QQYYIYPYT	BBAABBaLB
D	kappa	Homo.sapiens	Hu_IGKV1D-16*01	94.2	Hu_IGKV1D-16*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	Hu_IGHV3-66*01	53.8	H1	13	H1-13-1	10	AASGFTFTDYTMD	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	CDRLenMismatch	-1.0	H2	10	H2-10-1	10	DVNPNSGGSI	BBBAAALBBB
E	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	Hu_IGHV3-66*01	100.0	H3	12	H3-12-*	-1	ARNLGPSFYFDY	BBBBEABBBBAB
E	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	Hu_IGHV3-66*01	75.0	H4	8	H4-8-1	6	VDRSKNTL	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV1D-16*01	94.2	Hu_IGKV1D-16*01	45.5	L1	11	L1-11-1	7	KASQDVSIGVA	BBABBAEABBB
F	kappa	Homo.sapiens	Hu_IGKV1D-16*01	94.2	Hu_IGKV1D-16*01	37.5	L2	8	L2-8-1	7	YSASYRYT	BLLABBBB
F	kappa	Homo.sapiens	Hu_IGKV1D-16*01	94.2	Hu_IGKV1D-16*01	71.4	L3	9	L3-9-cis7-*	-1	QQYYIYPYT	BBAABBaLB
F	kappa	Homo.sapiens	Hu_IGKV1D-16*01	94.2	Hu_IGKV1D-16*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	Hu_IGHV3-66*01	53.8	H1	13	H1-13-1	7	AASGFTFTDYTMD	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	CDRLenMismatch	-1.0	H2	10	H2-10-1	10	DVNPNSGGSI	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	Hu_IGHV3-66*01	100.0	H3	12	H3-12-*	-1	ARNLGPSFYFDY	BBBBEABBBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	87.7	Hu_IGHV3-66*01	75.0	H4	8	H4-8-1	5	VDRSKNTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1D-16*01	94.2	Hu_IGKV1D-16*01	45.5	L1	11	L1-11-1	6	KASQDVSIGVA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1D-16*01	94.2	Hu_IGKV1D-16*01	37.5	L2	8	L2-8-1	8	YSASYRYT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1D-16*01	94.2	Hu_IGKV1D-16*01	71.4	L3	9	L3-9-cis7-*	-1	QQYYIYPYT	BBAABBaLB
L	kappa	Homo.sapiens	Hu_IGKV1D-16*01	94.2	Hu_IGKV1D-16*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022