PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5VR9

#CDRs = 8; #Clusters = 11.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV1-46*01	86.3	Hu_IGHV1-46*01	84.6	H1	13	H1-13-*	-1	KASGYTFTSHWMH	BBBLBALAABBBB
A	heavy	Homo.sapiens	Hu_IGHV1-46*01	86.3	Hu_IGHV1-46*01	50.0	H2	10	H2-10-*	-1	EFNPSnGRTN
A	heavy	Homo.sapiens	Hu_IGHV1-46*01	86.3	Hu_IGHV1-46*01	50.0	H3	14	H3-14-*	-1	ASRDYDYDGRYFDY	BBBBBBAALBBBBB
A	heavy	Homo.sapiens	Hu_IGHV1-46*01	86.3	Hu_IGHV1-46*01	62.5	H4	8	H4-8-1	7	VDTSTNTA	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	CDRLenMismatch	-1.0	L1	10	L1-10-*	-1	SASSSVTYMY	BBABAABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	50.0	L2	8	L2-8-1	6	YDTSNLAS	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	42.9	L3	9	L3-9-1	11	QQWSSHIFT	BBBBLLBBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	8	GSGTDY	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV1-46*01	86.3	Hu_IGHV1-46*01	84.6	H1	13	H1-13-*	-1	KASGYTFTSHWMH	BBBEBALAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-46*01	86.3	Hu_IGHV1-46*01	50.0	H2	10	H2-10-1	11	EFNPSNGRTN	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-46*01	86.3	Hu_IGHV1-46*01	50.0	H3	14	H3-14-*	-1	ASRDYDYDGRYFDY	BBBBBBAALBBBBB
H	heavy	Homo.sapiens	Hu_IGHV1-46*01	86.3	Hu_IGHV1-46*01	62.5	H4	8	H4-8-1	13	VDTSTNTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	CDRLenMismatch	-1.0	L1	10	L1-10-1	9	SASSSVTYMY	BBABBBABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	50.0	L2	8	L2-8-1	8	YDTSNLAS	BLEABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	42.9	L3	9	L3-9-1	9	QQWSSHIFT	BBBBLLBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	95.7	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	6	GSGTDY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022