PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5VQM

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Mo_IGKV5-48*01	90.9	L1	11	L1-11-1	6	RASQSVGTSIH	BBABBAEABBB
C	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Mo_IGKV5-48*01	87.5	L2	8	L2-8-1	15	KFASESIS	BLLABBBB
C	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	57.1	L3	9	L3-9-cis7-1	13	QQSNKWPFT	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Mo_IGHV1-20*01	76.9	H1	13	H1-13-1	9	KASGYPFTNYFMH	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Mo_IGHV1-20*01	80.0	H2	10	H2-10-*	-1	RINPYNGATS	BBBBLBABBB
D	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	100.0	H3	12	H3-12-*	-1	ARSTITSPLLDF	BBBABABBBBAB
D	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	75.0	H4	8	H4-8-1	11	LDKSASTA	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Mo_IGHV1-20*01	76.9	H1	13	H1-13-1	9	KASGYPFTNYFMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Mo_IGHV1-20*01	80.0	H2	10	H2-10-*	-1	RINPYNGATS	BBBBLEABBB
H	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	100.0	H3	12	H3-12-*	-1	ARSTITSPLLDF	BBBABABBBBAB
H	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	75.0	H4	8	H4-8-1	9	LDKSASTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Mo_IGKV5-48*01	90.9	L1	11	L1-11-1	6	RASQSVGTSIH	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Mo_IGKV5-48*01	87.5	L2	8	L2-8-1	15	KFASESIS	BLEABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	57.1	L3	9	L3-9-cis7-1	12	QQSNKWPFT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022