PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5VPH

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	kappa	Mus.musculus	Mo_IGKV14-111*01	91.3	Mo_IGKV14-111*01	90.9	L1	11	L1-11-2	6	KASQDIYSYLS	BBABBALLBBB
C	kappa	Mus.musculus	Mo_IGKV14-111*01	91.3	Mo_IGKV14-111*01	75.0	L2	8	L2-8-1	9	YRANRLIT	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV14-111*01	91.3	Mo_IGKV14-111*01	100.0	L3	9	L3-9-cis7-1	8	LQYDEFPYT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV14-111*01	91.3	Mo_IGKV14-111*01	100.0	L4	6	L4-6-1	11	GSGQDY	EBEABB
D	heavy	Mus.musculus	Mo_IGHV3-2*02	98.6	Mo_IGHV3-2*02	100.0	H1	14	H1-14-1	6	TVTGYSITsDYAWN	BBBLBBAAABEBBB
D	heavy	Mus.musculus	Mo_IGHV3-2*02	98.6	Mo_IGHV3-2*02	88.9	H2	9	H2-9-1	13	YISYSGTTS	BBBAALBBB
D	heavy	Mus.musculus	Mo_IGHV3-2*02	98.6	Mo_IGHV3-2*02	50.0	H3	14	H3-14-*	-1	GRTGVYRYPERAPY	BBBBABABbBBBBB
D	heavy	Mus.musculus	Mo_IGHV3-2*02	98.6	Mo_IGHV3-2*02	100.0	H4	8	H4-8-1	11	RDTSKNQF	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022