PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5VKD

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Al_IGHV3S2*01	53.8	H1	13	H1-13-1	11	AASGFNISYSSIH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Al_IGHV3S2*01	70.0	H2	10	H2-10-1	7	SIYSYSGYTS	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	100.0	H3	18	H3-18-*	-1	ARSYWYHvgswHYTGMDY
H	heavy	Homo.sapiens	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	62.5	H4	8	H4-8-1	4	ADTSKNTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Al_IGKV1-1*01	63.6	L1	11	L1-11-*	-1	RASQSVSSAVA	BBABBABABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Al_IGKV1-1*01	50.0	L2	8	L2-8-1	5	YSASSLYS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	57.1	L3	9	L3-9-*	-1	QQSSSSLIT	BBBBBLBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	10	RSGTDF	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022