PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5VEB

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	97.3	Hu_IGHV3-NL1*01	92.3	H1	13	H1-13-1	7	AASGFTFSSHGMH	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	97.3	Hu_IGHV3-NL1*01	50.0	H2	10	H2-10-2	12	VISGSGSNTG	BBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	97.3	Hu_IGHV3-NL1*01	50.0	H3	11	H3-11-*	-1	ARQWGSYAFDS	BBBBEBLBBAB
A	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	97.3	Hu_IGHV3-NL1*01	100.0	H4	8	H4-8-1	4	RDNSKNTL	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L1	11	L1-11-*	-1	RASQSISSYLN	BBABBBBABBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	10	YAVSTLQS	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	57.1	L3	10	L3-10-cis78-*	-1	QQSGTfpPTT	BBAABBbbBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	97.3	Hu_IGHV3-NL1*01	92.3	H1	13	H1-13-1	7	AASGFTFSSHGMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	97.3	Hu_IGHV3-NL1*01	50.0	H2	10	H2-10-2	11	VISGSGSNTG	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	97.3	Hu_IGHV3-NL1*01	50.0	H3	11	H3-11-*	-1	ARQWGSYAFDS	BBBBEBLBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-NL1*01	97.3	Hu_IGHV3-NL1*01	100.0	H4	8	H4-8-1	4	RDNSKNTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L1	11	L1-11-*	-1	RASQSISSYLN	BBABBBAABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	10	YAVSTLQS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	57.1	L3	10	L3-10-cis78-*	-1	QQSGTfpPTT	BBAABBbbBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022