PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5VCO

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	100.0	L1	11	L1-11-2	6	RASQDISNYLN	BBABBALLBBB
A	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	9	YYTSRLHS	BLEABBBB
A	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	100.0	L3	9	L3-9-cis7-1	10	QQGNTLPYT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	100.0	L4	6	L4-6-1	11	GSGTDY	EBEABB
B	heavy	Mus.musculus	Mo_IGHV3-8*02	93.2	Mo_IGHV3-8*02	92.3	H1	13	H1-13-*	-1	SVTGDSITSGFWN	BBBLBBAABEBBB
B	heavy	Mus.musculus	Mo_IGHV3-8*02	93.2	Mo_IGHV3-8*02	66.7	H2	9	H2-9-1	12	YITYSGTSY	BBBAALBBB
B	heavy	Mus.musculus	Mo_IGHV3-8*02	93.2	Mo_IGHV3-8*02	100.0	H3	16	H3-16-*	-1	ARRGFltTVNYYAMDY
B	heavy	Mus.musculus	Mo_IGHV3-8*02	93.2	Mo_IGHV3-8*02	100.0	H4	8	H4-8-1	13	RDTSKNQY	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	100.0	L1	11	L1-11-2	7	RASQDISNYLN	BBABBALLBBB
C	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	8	YYTSRLHS	BLEABBBB
C	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	100.0	L3	9	L3-9-cis7-1	10	QQGNTLPYT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	100.0	L4	6	L4-6-1	12	GSGTDY	EBEABB
D	heavy	Mus.musculus	Mo_IGHV3-8*02	93.2	Mo_IGHV3-8*02	92.3	H1	13	H1-13-*	-1	SVTGDSITSGFWN	BBBLBBAABEBBB
D	heavy	Mus.musculus	Mo_IGHV3-8*02	93.2	Mo_IGHV3-8*02	66.7	H2	9	H2-9-1	13	YITYSGTSY	BBBAALBBB
D	heavy	Mus.musculus	Mo_IGHV3-8*02	93.2	Mo_IGHV3-8*02	100.0	H3	16	H3-16-*	-1	ARRGFltTVNYYAMDY
D	heavy	Mus.musculus	Mo_IGHV3-8*02	93.2	Mo_IGHV3-8*02	100.0	H4	8	H4-8-1	12	RDTSKNQY	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022