PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5UXQ

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV1-8*03	80.3	Hu_IGHV1-8*03	61.5	H1	13	H1-13-*	-1	KAsgntfsKYDVH
A	heavy	Homo.sapiens	Hu_IGHV1-8*03	80.3	Hu_IGHV1-8*03	30.0	H2	10	H2-10-2	15	WMSHEGDKTE	BBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV1-8*03	80.3	Hu_IGHV1-8*03	50.0	H3	34	H3-34-*	-1	TRGSKHRLRDYvlyddyglinyqewndylefLDV
A	heavy	Homo.sapiens	Hu_IGHV1-8*03	80.3	Hu_IGHV1-8*03	75.0	H4	8	H4-8-*	-1	RDTSASTA	BBAALABB
B	kappa	Homo.sapiens	Hu_IGKV2-28*01	83.6	Hu_IGKV2-28*01	68.8	L1	16	L1-16-1	16	TSTQSLRhsngaNYLA	BBABBABBAALBBBBB
B	kappa	Homo.sapiens	Hu_IGKV2-28*01	83.6	Hu_IGKV2-28*01	75.0	L2	8	L2-8-1	9	RLGSQRAS	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV2-28*01	83.6	Hu_IGKV2-28*01	57.1	L3	9	L3-9-cis7-1	15	MQGLNRPWT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV2-28*01	83.6	Hu_IGKV2-28*01	83.3	L4	6	L4-6-1	14	GSGTHF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV1-8*03	80.3	Hu_IGHV1-8*03	61.5	H1	13	H1-13-3	26	KASGNTFSKYDVH	BBBEAAAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-8*03	80.3	Hu_IGHV1-8*03	30.0	H2	10	H2-10-2	14	WMSHEGDKTE	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV1-8*03	80.3	Hu_IGHV1-8*03	50.0	H3	34	H3-34-*	-1	TRGSKHRLRDYvlyddyglinyqewndylefLDV
H	heavy	Homo.sapiens	Hu_IGHV1-8*03	80.3	Hu_IGHV1-8*03	75.0	H4	8	H4-8-*	-1	RDTSASTA	BBAALABB
L	kappa	Homo.sapiens	Hu_IGKV2-28*01	83.6	Hu_IGKV2-28*01	68.8	L1	16	L1-16-1	14	TSTQSLRhsngaNYLA	BBABBABBAALBBBBB
L	kappa	Homo.sapiens	Hu_IGKV2-28*01	83.6	Hu_IGKV2-28*01	75.0	L2	8	L2-8-1	7	RLGSQRAS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV2-28*01	83.6	Hu_IGKV2-28*01	57.1	L3	9	L3-9-cis7-1	15	MQGLNRPWT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV2-28*01	83.6	Hu_IGKV2-28*01	83.3	L4	6	L4-6-1	19	GSGTHF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022