PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5UQY

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	90.9	L1	11	L1-11-*	-1	QASQVISNYLN	BBABBBABBBB
C	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	75.0	L2	8	L2-8-1	19	YDTSNLKT	BLLABBBB
C	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	71.4	L3	9	L3-9-1	15	QQYENlQFT	BBBBLLBBB
C	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV4-39*01	93.2	Hu_IGHV4-39*01	100.0	H1	15	H1-15-2	12	TVSGGSIssSSYYWG	BBBLEBABBAABBBB
D	heavy	Homo.sapiens	Hu_IGHV4-39*01	93.2	Hu_IGHV4-39*01	55.6	H2	9	H2-9-1	18	SVYYSGGAS	BBBAALBBB
D	heavy	Homo.sapiens	Hu_IGHV4-39*01	93.2	Hu_IGHV4-39*01	50.0	H3	17	H3-17-*	-1	ASIYgsgTFYYYFYMDV
D	heavy	Homo.sapiens	Hu_IGHV4-39*01	93.2	Hu_IGHV4-39*01	100.0	H4	8	H4-8-1	13	VDTSKNQF	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	90.9	L1	11	L1-11-*	-1	QASQVISNYLN	BBABBBABBBB
G	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	75.0	L2	8	L2-8-1	20	YDTSNLKT	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	71.4	L3	9	L3-9-1	14	QQYENlQFT	BBBBLLBBB
G	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV4-39*01	93.2	Hu_IGHV4-39*01	100.0	H1	15	H1-15-2	12	TVSGGSIssSSYYWG	BBBLEBABBAABBBB
H	heavy	Homo.sapiens	Hu_IGHV4-39*01	93.2	Hu_IGHV4-39*01	55.6	H2	9	H2-9-1	18	SVYYSGGAS	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-39*01	93.2	Hu_IGHV4-39*01	50.0	H3	17	H3-17-*	-1	ASIYgsgTFYYYFYMDV
H	heavy	Homo.sapiens	Hu_IGHV4-39*01	93.2	Hu_IGHV4-39*01	100.0	H4	8	H4-8-1	13	VDTSKNQF	BBAAALBB
K	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	90.9	L1	11	L1-11-*	-1	QASQVISNYLN	BBABBBABBBB
K	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	75.0	L2	8	L2-8-1	19	YDTSNLKT	BLLABBBB
K	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	71.4	L3	9	L3-9-1	15	QQYENlQFT	BBBBLLBBB
K	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
L	heavy	Homo.sapiens	Hu_IGHV4-39*01	93.2	Hu_IGHV4-39*01	100.0	H1	15	H1-15-2	12	TVSGGSIssSSYYWG	BBBLEBABBAABBBB
L	heavy	Homo.sapiens	Hu_IGHV4-39*01	93.2	Hu_IGHV4-39*01	55.6	H2	9	H2-9-1	18	SVYYSGGAS	BBBAALBBB
L	heavy	Homo.sapiens	Hu_IGHV4-39*01	93.2	Hu_IGHV4-39*01	50.0	H3	17	H3-17-*	-1	ASIYgsgTFYYYFYMDV
L	heavy	Homo.sapiens	Hu_IGHV4-39*01	93.2	Hu_IGHV4-39*01	100.0	H4	8	H4-8-1	13	VDTSKNQF	BBAAALBB
O	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	90.9	L1	11	L1-11-*	-1	QASQVISNYLN	BBABBBABBBB
O	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	75.0	L2	8	L2-8-1	20	YDTSNLKT	BLLABBBB
O	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	71.4	L3	9	L3-9-1	15	QQYENlQFT	BBBBLLBBB
O	kappa	Homo.sapiens	Hu_IGKV1-33*01	100.0	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
P	heavy	Homo.sapiens	Hu_IGHV4-39*01	93.2	Hu_IGHV4-39*01	100.0	H1	15	H1-15-2	12	TVSGGSIssSSYYWG	BBBLEBABBAABBBB
P	heavy	Homo.sapiens	Hu_IGHV4-39*01	93.2	Hu_IGHV4-39*01	55.6	H2	9	H2-9-1	18	SVYYSGGAS	BBBAALBBB
P	heavy	Homo.sapiens	Hu_IGHV4-39*01	93.2	Hu_IGHV4-39*01	50.0	H3	17	H3-17-*	-1	ASIYgsgTFYYYFYMDV
P	heavy	Homo.sapiens	Hu_IGHV4-39*01	93.2	Hu_IGHV4-39*01	100.0	H4	8	H4-8-1	13	VDTSKNQF	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022