PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5UMI

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV1-3*04	94.5	Mo_IGHV1S111*01	100.0	H1	13	H1-13-1	23	KASGYTFTDYNMD	BBBLBBAAABBBE
A	heavy	Homo.sapiens	Hu_IGHV1-3*04	94.5	Mo_IGHV1S111*01	60.0	H2	10	H2-10-*	-1	DINPKYDIIG	BBBAALBBBL
A	heavy	Homo.sapiens	Hu_IGHV1-3*04	94.5	Hu_IGHV1-3*04	100.0	H3	11	H3-11-*	-1	ARSDRGWYFDV	EBBBLLBLLAB
A	heavy	Homo.sapiens	Hu_IGHV1-3*04	94.5	Hu_IGHV1-3*04	100.0	H4	8	H4-8-1	9	RDTSASTA	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Mo_IGKV4-72*01	80.0	L1	10	L1-10-1	12	RASSSVNYMN	BBABBBABBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Mo_IGKV4-72*01	100.0	L2	8	L2-8-*	-1	YATSNLAS	BEABBBBL
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	42.9	L3	7	L3-7-*	-1	QQWSSRT
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	24	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV1-3*04	94.5	Mo_IGHV1S111*01	100.0	H1	13	H1-13-1	16	KASGYTFTDYNMD	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-3*04	94.5	Mo_IGHV1S111*01	60.0	H2	10	H2-10-1	13	DINPKYDIIG	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-3*04	94.5	Hu_IGHV1-3*04	100.0	H3	11	H3-11-*	-1	ARSDRGWYFDV	BBBBLLABBAB
H	heavy	Homo.sapiens	Hu_IGHV1-3*04	94.5	Hu_IGHV1-3*04	100.0	H4	8	H4-8-1	12	RDTSASTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Mo_IGKV4-72*01	80.0	L1	10	L1-10-1	12	RASSSVNYMN	BBABBBABBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Mo_IGKV4-72*01	100.0	L2	8	L2-8-4	27	YATSNLAS	BEAABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	42.9	L3	7	L3-7-*	-1	QQWSSRT
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	19	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022