PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5UKB

#CDRs = 4; #Clusters = 4.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
a	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	53.8	H1	13	H1-13-*	-1	VASGRPFRNYRLG	BBBEBABBBBBBB
a	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	50.0	H2	10	H2-10-2	19	AINWGGVITN	BBBAALABBB
a	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	100.0	H3	17	H3-17-*	-1	AAFDSTGSpivRDNYEY
a	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	87.5	H4	8	H4-8-1	19	RDDAKNTV	BBAAALBB
b	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	53.8	H1	13	H1-13-*	-1	VASGRPFRNYRLG	BBBEBABBBBBBB
b	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	50.0	H2	10	H2-10-2	19	AINWGGVITN	BBBAALABBB
b	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	100.0	H3	17	H3-17-*	-1	AAFDSTGSpivRDNYEY
b	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	87.5	H4	8	H4-8-1	19	RDDAKNTV	BBAAALBB
c	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	53.8	H1	13	H1-13-*	-1	VASGRPFRNYRLG	BBBEBABBBBBBB
c	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	50.0	H2	10	H2-10-2	19	AINWGGVITN	BBBAALABBB
c	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	100.0	H3	17	H3-17-*	-1	AAFDSTGSpivRDNYEY
c	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	87.5	H4	8	H4-8-1	19	RDDAKNTV	BBAAALBB
d	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	53.8	H1	13	H1-13-*	-1	VASGRPFRNYRLG	BBBEBABBBBBBB
d	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	50.0	H2	10	H2-10-2	19	AINWGGVITN	BBBAALABBB
d	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	100.0	H3	17	H3-17-*	-1	AAFDSTGSpivRDNYEY
d	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	87.5	H4	8	H4-8-1	19	RDDAKNTV	BBAAALBB
e	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	53.8	H1	13	H1-13-*	-1	VASGRPFRNYRLG	BBBEBABBBBBBB
e	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	50.0	H2	10	H2-10-2	19	AINWGGVITN	BBBAALABBB
e	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	100.0	H3	17	H3-17-*	-1	AAFDSTGSpivRDNYEY
e	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	87.5	H4	8	H4-8-1	19	RDDAKNTV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022