PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5UK2

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
G	heavy	Homo.sapiens	Hu_IGHV3-13*01	90.4	Hu_IGHV3-13*01	84.6	H1	13	H1-13-1	26	AASGFTFNIYDMH	BBBLBBAAABBBB
G	heavy	Homo.sapiens	Hu_IGHV3-13*01	90.4	Hu_IGHV3-13*01	44.4	H2	9	H2-9-1	21	GLTTGGDTS	BBBAALBBB
G	heavy	Homo.sapiens	Hu_IGHV3-13*01	90.4	Hu_IGHV3-13*01	50.0	H3	21	H3-21-*	-1	VRGVREVGatggdpfYYAMAV
G	heavy	Homo.sapiens	Hu_IGHV3-13*01	90.4	Hu_IGHV3-13*01	100.0	H4	8	H4-8-1	17	RENAKNSL	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	66.7	L1	12	L1-12-*	-1	RASQSISGyYLT	BBABBALLAABB
G	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L2	8	L2-8-1	24	YGASSRAT	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	85.7	L3	10	L3-10-*	-1	QQYGISPvIT	BBBBABBBBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	20	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-13*01	90.4	Hu_IGHV3-13*01	84.6	H1	13	H1-13-1	26	AASGFTFNIYDMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-13*01	90.4	Hu_IGHV3-13*01	44.4	H2	9	H2-9-1	21	GLTTGGDTS	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV3-13*01	90.4	Hu_IGHV3-13*01	50.0	H3	21	H3-21-*	-1	VRGVREVGatggdpfYYAMAV
H	heavy	Homo.sapiens	Hu_IGHV3-13*01	90.4	Hu_IGHV3-13*01	100.0	H4	8	H4-8-1	17	RENAKNSL	BBAAALBB
H	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	66.7	L1	12	L1-12-*	-1	RASQSISGyYLT	BBABBALLAABB
H	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L2	8	L2-8-1	24	YGASSRAT	BLLABBBB
H	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	85.7	L3	10	L3-10-*	-1	QQYGISPvIT	BBBBABBBBB
H	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	20	GSGTDF	EBEABB
I	heavy	Homo.sapiens	Hu_IGHV3-13*01	90.4	Hu_IGHV3-13*01	84.6	H1	13	H1-13-1	26	AASGFTFNIYDMH	BBBLBBAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV3-13*01	90.4	Hu_IGHV3-13*01	44.4	H2	9	H2-9-1	21	GLTTGGDTS	BBBAALBBB
I	heavy	Homo.sapiens	Hu_IGHV3-13*01	90.4	Hu_IGHV3-13*01	50.0	H3	21	H3-21-*	-1	VRGVREVGatggdpfYYAMAV
I	heavy	Homo.sapiens	Hu_IGHV3-13*01	90.4	Hu_IGHV3-13*01	100.0	H4	8	H4-8-1	17	RENAKNSL	BBAAALBB
I	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	66.7	L1	12	L1-12-*	-1	RASQSISGyYLT	BBABBALLAABB
I	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L2	8	L2-8-1	24	YGASSRAT	BLLABBBB
I	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	85.7	L3	10	L3-10-*	-1	QQYGISPvIT	BBBBABBBBB
I	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	20	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022