PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5UDC

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	46.2	H1	13	H1-13-1	18	QASGGLLEDYIIN	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	70.0	H2	10	H2-10-1	16	GIIPVLGTVH	BBBAAALBBB
B	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	50.0	H3	19	H3-19-*	-1	ATETAlvvseTYLPHYFDN
B	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	75.0	H4	8	H4-8-1	18	ADESTDTA	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	90.9	L1	11	L1-11-1	7	QASQDIVNYLN	BBABBAEABBB
C	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	87.5	L2	8	L2-8-1	4	YVASNLET	BLLABBBB
C	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	10	QQYDNlPLT	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	46.2	H1	13	H1-13-1	18	QASGGLLEDYIIN	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	70.0	H2	10	H2-10-1	16	GIIPVLGTVH	BBBAAALBBB
E	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	50.0	H3	19	H3-19-*	-1	ATETAlvvseTYLPHYFDN
E	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	75.0	H4	8	H4-8-1	18	ADESTDTA	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	90.9	L1	11	L1-11-1	7	QASQDIVNYLN	BBABBAEABBB
G	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	87.5	L2	8	L2-8-1	4	YVASNLET	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	10	QQYDNlPLT	BBAABBbBB
G	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	46.2	H1	13	H1-13-1	18	QASGGLLEDYIIN	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	70.0	H2	10	H2-10-1	16	GIIPVLGTVH	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	50.0	H3	19	H3-19-*	-1	ATETAlvvseTYLPHYFDN
H	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	75.0	H4	8	H4-8-1	17	ADESTDTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	90.9	L1	11	L1-11-1	6	QASQDIVNYLN	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	87.5	L2	8	L2-8-1	4	YVASNLET	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	10	QQYDNlPLT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022