PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5U4R

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-11*01	89.0	Hu_IGHV3-11*01	61.5	H1	13	H1-13-1	12	EVSGFTFSDYHAT	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-11*01	89.0	Hu_IGHV3-11*01	80.0	H2	10	H2-10-2	6	YISGSGSTTY	BBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV3-11*01	89.0	Hu_IGHV3-11*01	100.0	H3	23	H3-23-*	-1	ARTRlgdivqapgVIGYYYGMDV
A	heavy	Homo.sapiens	Hu_IGHV3-11*01	89.0	Hu_IGHV3-11*01	87.5	H4	8	H4-8-1	8	RDNAKNSV	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	72.7	L1	11	L1-11-1	5	RASQRIRNYLN	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	5	YTASKLQG	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	71.4	L3	9	L3-9-cis7-1	10	QQSHETPLT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	3	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-11*01	89.0	Hu_IGHV3-11*01	61.5	H1	13	H1-13-1	12	EVSGFTFSDYHAT	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-11*01	89.0	Hu_IGHV3-11*01	80.0	H2	10	H2-10-2	6	YISGSGSTTY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-11*01	89.0	Hu_IGHV3-11*01	100.0	H3	23	H3-23-*	-1	ARTRlgdivqapgVIGYYYGMDV
H	heavy	Homo.sapiens	Hu_IGHV3-11*01	89.0	Hu_IGHV3-11*01	87.5	H4	8	H4-8-1	8	RDNAKNSV	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	72.7	L1	11	L1-11-1	5	RASQRIRNYLN	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	5	YTASKLQG	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	71.4	L3	9	L3-9-cis7-1	9	QQSHETPLT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022