PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5U3K

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-15*07	80.8	Hu_IGHV3-15*07	61.5	H1	13	H1-13-1	15	SASGFFFDNSWMG	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-15*07	80.8	Hu_IGHV3-15*07	41.7	H2	12	H2-12-1	15	RIRRlkDGATGE	BBBBAAALLBBB
A	heavy	Homo.sapiens	Hu_IGHV3-15*07	80.8	Hu_IGHV3-15*07	50.0	H3	23	H3-23-*	-1	TMDEGTpvtrflewgYFYYYMAV
A	heavy	Homo.sapiens	Hu_IGHV3-15*07	80.8	Hu_IGHV3-15*07	75.0	H4	8	H4-8-1	7	RDDSRNML	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV1-27*01	84.1	Hu_IGKV1-27*01	63.6	L1	11	L1-11-1	6	RASQNIRDYLN	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV1-27*01	84.1	Hu_IGKV1-27*01	87.5	L2	8	L2-8-1	7	YAASTLQT	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-27*01	84.1	Hu_IGKV1-27*01	14.3	L3	11	L3-11-*	-1	QENYNTIpslS	BBBABABBALB
B	kappa	Homo.sapiens	Hu_IGKV1-27*01	84.1	Hu_IGKV1-27*01	66.7	L4	6	L4-6-1	12	GSGNLF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-15*07	80.8	Hu_IGHV3-15*07	61.5	H1	13	H1-13-1	15	SASGFFFDNSWMG	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-15*07	80.8	Hu_IGHV3-15*07	41.7	H2	12	H2-12-1	15	RIRRlkDGATGE	BBBBAAALLBBB
H	heavy	Homo.sapiens	Hu_IGHV3-15*07	80.8	Hu_IGHV3-15*07	50.0	H3	23	H3-23-*	-1	TMDEGTpvtrflewgYFYYYMAV
H	heavy	Homo.sapiens	Hu_IGHV3-15*07	80.8	Hu_IGHV3-15*07	75.0	H4	8	H4-8-1	7	RDDSRNML	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-27*01	84.1	Hu_IGKV1-27*01	63.6	L1	11	L1-11-1	6	RASQNIRDYLN	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-27*01	84.1	Hu_IGKV1-27*01	87.5	L2	8	L2-8-1	7	YAASTLQT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-27*01	84.1	Hu_IGKV1-27*01	14.3	L3	11	L3-11-*	-1	QENYNTIpslS	BBBABABBALB
L	kappa	Homo.sapiens	Hu_IGKV1-27*01	84.1	Hu_IGKV1-27*01	66.7	L4	6	L4-6-1	13	GSGNLF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022