PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5TUD

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	kappa	Mus.musculus	Mo_IGKV4-57*01	97.1	Mo_IGKV4-57*01	100.0	L1	10	L1-10-1	15	SASSSVSYMH	BBABBBABBB
B	kappa	Mus.musculus	Mo_IGKV4-57*01	97.1	Mo_IGKV4-57*01	100.0	L2	8	L2-8-4	20	YSTSNLAS	BEAABBBB
B	kappa	Mus.musculus	Mo_IGKV4-57*01	97.1	Mo_IGKV4-57*01	87.5	L3	9	L3-9-cis7-1	13	QQRSSYPLT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV4-57*01	97.1	Mo_IGKV4-57*01	100.0	L4	6	L4-6-3	22	GSGTSY	BBAABB
C	heavy	Mus.musculus	Mo_IGHV1-53*01	90.4	Mo_IGHV1-53*01	92.3	H1	13	H1-13-*	-1	KASGYTFTSSWMH	BBBLBALAABBBB
C	heavy	Mus.musculus	Mo_IGHV1-53*01	90.4	Mo_IGHV1-53*01	90.0	H2	10	H2-10-1	11	NIYPSNGGTN	BBBAAALBBB
C	heavy	Mus.musculus	Mo_IGHV1-53*01	90.4	Mo_IGHV1-53*01	100.0	H3	20	H3-20-*	-1	ARFGSfittilTTYYNPVDY
C	heavy	Mus.musculus	Mo_IGHV1-53*01	90.4	Mo_IGHV1-53*01	75.0	H4	8	H4-8-1	13	VDRSSNTA	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV4-57*01	97.1	Mo_IGKV4-57*01	100.0	L1	10	L1-10-1	14	SASSSVSYMH	BBABBBABBB
E	kappa	Mus.musculus	Mo_IGKV4-57*01	97.1	Mo_IGKV4-57*01	100.0	L2	8	L2-8-*	-1	YSTSNLAS	ABBLBBBB
E	kappa	Mus.musculus	Mo_IGKV4-57*01	97.1	Mo_IGKV4-57*01	87.5	L3	9	L3-9-cis7-1	15	QQRSSYPLT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV4-57*01	97.1	Mo_IGKV4-57*01	100.0	L4	6	L4-6-3	17	GSGTSY	EBAABB
F	heavy	Mus.musculus	Mo_IGHV1-53*01	90.4	Mo_IGHV1-53*01	92.3	H1	13	H1-13-*	-1	KASGYTFTSSWMH	BBBLBALAABBBB
F	heavy	Mus.musculus	Mo_IGHV1-53*01	90.4	Mo_IGHV1-53*01	90.0	H2	10	H2-10-1	15	NIYPSNGGTN	BBBAAALBBB
F	heavy	Mus.musculus	Mo_IGHV1-53*01	90.4	Mo_IGHV1-53*01	100.0	H3	20	H3-20-*	-1	ARFGSfittilTTYYNPVDY
F	heavy	Mus.musculus	Mo_IGHV1-53*01	90.4	Mo_IGHV1-53*01	75.0	H4	8	H4-8-1	13	VDRSSNTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022