PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5TKJ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	92.3	H1	13	H1-13-1	8	KASGYTFTDYEIH	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	70.0	H2	10	H2-10-1	5	AIVPKTGYTA	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	100.0	H3	11	H3-11-*	-1	TRLRNYWYFDV	BBBBBLBBBAB
A	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	100.0	H4	8	H4-8-1	8	ADKSSSTA	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	94.0	Mo_IGKV1-117*01	87.5	L1	16	L1-16-1	7	RSSQSIvysdgNTYLE	BBABBABBAALBBBBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	94.0	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	5	YKVSNRFS	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	94.0	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	11	FQGSHVPYT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	94.0	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	92.3	H1	13	H1-13-1	8	KASGYTFTDYEIH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	70.0	H2	10	H2-10-1	4	AIVPKTGYTA	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	100.0	H3	11	H3-11-*	-1	TRLRNYWYFDV	BBBBBLBBBAB
D	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	100.0	H4	8	H4-8-1	7	ADKSSSTA	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV1-117*01	94.0	Mo_IGKV1-117*01	87.5	L1	16	L1-16-1	8	RSSQSIvysdgNTYLE	BBABBABBAALBBBBB
E	kappa	Mus.musculus	Mo_IGKV1-117*01	94.0	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	5	YKVSNRFS	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV1-117*01	94.0	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	11	FQGSHVPYT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV1-117*01	94.0	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
G	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	92.3	H1	13	H1-13-1	9	KASGYTFTDYEIH	BBBLBBAAABBBB
G	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	70.0	H2	10	H2-10-1	5	AIVPKTGYTA	BBBAAALBBB
G	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	100.0	H3	11	H3-11-*	-1	TRLRNYWYFDV	BBBBBLBBBAB
G	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	100.0	H4	8	H4-8-1	7	ADKSSSTA	BBAAALBB
H	kappa	Mus.musculus	Mo_IGKV1-117*01	94.0	Mo_IGKV1-117*01	87.5	L1	16	L1-16-1	7	RSSQSIvysdgNTYLE	BBABBABBAALBBBBB
H	kappa	Mus.musculus	Mo_IGKV1-117*01	94.0	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	5	YKVSNRFS	BLLABBBB
H	kappa	Mus.musculus	Mo_IGKV1-117*01	94.0	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	11	FQGSHVPYT	BBAABBbBB
H	kappa	Mus.musculus	Mo_IGKV1-117*01	94.0	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
J	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	92.3	H1	13	H1-13-1	9	KASGYTFTDYEIH	BBBLBBAAABBBB
J	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	70.0	H2	10	H2-10-1	5	AIVPKTGYTA	BBBAAALBBB
J	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	100.0	H3	11	H3-11-*	-1	TRLRNYWYFDV	BBBBBLBBBAB
J	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	100.0	H4	8	H4-8-1	7	ADKSSSTA	BBAAALBB
K	kappa	Mus.musculus	Mo_IGKV1-117*01	94.0	Mo_IGKV1-117*01	87.5	L1	16	L1-16-1	8	RSSQSIvysdgNTYLE	BBABBABBAALBBBBB
K	kappa	Mus.musculus	Mo_IGKV1-117*01	94.0	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	6	YKVSNRFS	BLLABBBB
K	kappa	Mus.musculus	Mo_IGKV1-117*01	94.0	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	11	FQGSHVPYT	BBAABBbBB
K	kappa	Mus.musculus	Mo_IGKV1-117*01	94.0	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022