PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5TH9

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Oryctolagus.cuniculus	Mo_IGHV2-9*02	80.8	Mo_IGHV2-9*02	92.3	H1	13	H1-13-1	12	TVSGFSLLSYGVH	BBBLBBAAABBBB
H	heavy	Oryctolagus.cuniculus	Mo_IGHV2-9*02	80.8	Mo_IGHV2-9*02	77.8	H2	9	H2-9-1	8	VIWTGGTTN	BBBAALBBB
H	heavy	Oryctolagus.cuniculus	Mo_IGHV2-9*02	80.8	Mo_IGHV2-9*02	100.0	H3	9	H3-9-*	-1	ARYYYGMDY	BBBBLEBAB
H	heavy	Oryctolagus.cuniculus	Mo_IGHV2-9*02	80.8	Mo_IGHV2-9*02	62.5	H4	8	H4-8-1	9	KDDSKNTV	BBAAALBB
I	heavy	Oryctolagus.cuniculus	Mo_IGHV2-9*02	80.8	Mo_IGHV2-9*02	92.3	H1	13	H1-13-1	13	TVSGFSLLSYGVH	BBBLBBAAABBBB
I	heavy	Oryctolagus.cuniculus	Mo_IGHV2-9*02	80.8	Mo_IGHV2-9*02	77.8	H2	9	H2-9-1	9	VIWTGGTTN	BBBAALBBB
I	heavy	Oryctolagus.cuniculus	Mo_IGHV2-9*02	80.8	Mo_IGHV2-9*02	100.0	H3	9	H3-9-*	-1	ARYYYGMDY	BBBBLEBAB
I	heavy	Oryctolagus.cuniculus	Mo_IGHV2-9*02	80.8	Mo_IGHV2-9*02	62.5	H4	8	H4-8-1	12	KDDSKNTV	BBAAALBB
J	heavy	Oryctolagus.cuniculus	Mo_IGHV2-9*02	80.8	Mo_IGHV2-9*02	92.3	H1	13	H1-13-1	18	TVSGFSLLSYGVH	BBBLBBAAABBBB
J	heavy	Oryctolagus.cuniculus	Mo_IGHV2-9*02	80.8	Mo_IGHV2-9*02	77.8	H2	9	H2-9-1	18	VIWTGGTTN	EBBAALBBB
J	heavy	Oryctolagus.cuniculus	Mo_IGHV2-9*02	80.8	Mo_IGHV2-9*02	100.0	H3	9	H3-9-*	-1	ARYYYGMDY	BBBBLEBAB
J	heavy	Oryctolagus.cuniculus	Mo_IGHV2-9*02	80.8	Mo_IGHV2-9*02	62.5	H4	8	H4-8-1	27	KDDSKNTV	EBAAALBB
L	kappa	Oryctolagus.cuniculus	Mo_IGKV6-17*01	81.2	Mo_IGKV6-17*01	72.7	L1	11	L1-11-1	9	KASQDVRNTVA	BBABBAEABBB
L	kappa	Oryctolagus.cuniculus	Mo_IGKV6-17*01	81.2	Mo_IGKV6-17*01	75.0	L2	8	L2-8-1	8	YSSSYRNT	BLEABBBB
L	kappa	Oryctolagus.cuniculus	Mo_IGKV6-17*01	81.2	Mo_IGKV6-17*01	85.7	L3	9	L3-9-cis7-1	20	QQHYITPYT	BBAABBbBB
L	kappa	Oryctolagus.cuniculus	Mo_IGKV6-17*01	81.2	Mo_IGKV6-17*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
M	kappa	Oryctolagus.cuniculus	Mo_IGKV6-17*01	81.2	Mo_IGKV6-17*01	72.7	L1	11	L1-11-1	9	KASQDVRNTVA	BBABBAEAABB
M	kappa	Oryctolagus.cuniculus	Mo_IGKV6-17*01	81.2	Mo_IGKV6-17*01	75.0	L2	8	L2-8-1	7	YSSSYRNT	BLEABBBB
M	kappa	Oryctolagus.cuniculus	Mo_IGKV6-17*01	81.2	Mo_IGKV6-17*01	85.7	L3	9	L3-9-cis7-1	18	QQHYITPYT	BBAABBbBB
M	kappa	Oryctolagus.cuniculus	Mo_IGKV6-17*01	81.2	Mo_IGKV6-17*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
N	kappa	Oryctolagus.cuniculus	Mo_IGKV6-17*01	81.2	Mo_IGKV6-17*01	72.7	L1	11	L1-11-1	27	KASQDVRNTVA	BBABBAEABBB
N	kappa	Oryctolagus.cuniculus	Mo_IGKV6-17*01	81.2	Mo_IGKV6-17*01	75.0	L2	8	L2-8-1	17	YSSSYRNT	BLEABBBB
N	kappa	Oryctolagus.cuniculus	Mo_IGKV6-17*01	81.2	Mo_IGKV6-17*01	85.7	L3	9	L3-9-cis7-1	20	QQHYITPYT	BBAABBbBB
N	kappa	Oryctolagus.cuniculus	Mo_IGKV6-17*01	81.2	Mo_IGKV6-17*01	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022