PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5T5N

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
F	kappa	Mus.musculus	Mo_IGKV12-44*01	97.1	Mo_IGKV12-44*01	90.9	L1	11	L1-11-1	7	RASENIYSYLT	BBABBAEABBB
F	kappa	Mus.musculus	Mo_IGKV12-44*01	97.1	Mo_IGKV12-44*01	87.5	L2	8	L2-8-*	-1	YNAKTLTE	BLLABBBA
F	kappa	Mus.musculus	Mo_IGKV12-44*01	97.1	Mo_IGKV12-44*01	100.0	L3	9	L3-9-cis7-2	17	QHHYGTPPT	BBABEBbBB
F	kappa	Mus.musculus	Mo_IGKV12-44*01	97.1	Mo_IGKV12-44*01	100.0	L4	6	L4-6-1	9	GSGTQF	EBEABB
G	heavy	Mus.musculus	Mo_IGHV1-69*02	87.7	Mo_IGHV1-69*02	92.3	H1	13	H1-13-1	9	KASGYTFTNYWMH	BBBLBBAAABBBB
G	heavy	Mus.musculus	Mo_IGHV1-69*02	87.7	Mo_IGHV1-69*02	60.0	H2	10	H2-10-1	13	MIDPSKSETT	BBBAAALBBB
G	heavy	Mus.musculus	Mo_IGHV1-69*02	87.7	Mo_IGHV1-69*02	100.0	H3	9	H3-9-*	-1	AREVYYFDY	BBBBLBBAB
G	heavy	Mus.musculus	Mo_IGHV1-69*02	87.7	Mo_IGHV1-69*02	87.5	H4	8	H4-8-1	9	VDKSSNTA	BBAAALBB
H	kappa	Mus.musculus	Mo_IGKV12-44*01	97.1	Mo_IGKV12-44*01	90.9	L1	11	L1-11-1	7	RASENIYSYLT	BBABBAEABBB
H	kappa	Mus.musculus	Mo_IGKV12-44*01	97.1	Mo_IGKV12-44*01	87.5	L2	8	L2-8-*	-1	YNAKTLTE	BLLABBBA
H	kappa	Mus.musculus	Mo_IGKV12-44*01	97.1	Mo_IGKV12-44*01	100.0	L3	9	L3-9-cis7-2	17	QHHYGTPPT	BBABEBbBB
H	kappa	Mus.musculus	Mo_IGKV12-44*01	97.1	Mo_IGKV12-44*01	100.0	L4	6	L4-6-1	9	GSGTQF	EBEABB
I	heavy	Mus.musculus	Mo_IGHV1-69*02	87.7	Mo_IGHV1-69*02	92.3	H1	13	H1-13-1	9	KASGYTFTNYWMH	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV1-69*02	87.7	Mo_IGHV1-69*02	60.0	H2	10	H2-10-1	13	MIDPSKSETT	BBBAAALBBB
I	heavy	Mus.musculus	Mo_IGHV1-69*02	87.7	Mo_IGHV1-69*02	100.0	H3	9	H3-9-*	-1	AREVYYFDY	BBBBLBBAB
I	heavy	Mus.musculus	Mo_IGHV1-69*02	87.7	Mo_IGHV1-69*02	87.5	H4	8	H4-8-1	9	VDKSSNTA	BBAAALBB
J	kappa	Mus.musculus	Mo_IGKV12-44*01	97.1	Mo_IGKV12-44*01	90.9	L1	11	L1-11-1	7	RASENIYSYLT	BBABBAEABBB
J	kappa	Mus.musculus	Mo_IGKV12-44*01	97.1	Mo_IGKV12-44*01	87.5	L2	8	L2-8-*	-1	YNAKTLTE	BLLABBBA
J	kappa	Mus.musculus	Mo_IGKV12-44*01	97.1	Mo_IGKV12-44*01	100.0	L3	9	L3-9-cis7-2	17	QHHYGTPPT	BBABEBbBB
J	kappa	Mus.musculus	Mo_IGKV12-44*01	97.1	Mo_IGKV12-44*01	100.0	L4	6	L4-6-1	9	GSGTQF	EBEABB
K	heavy	Mus.musculus	Mo_IGHV1-69*02	87.7	Mo_IGHV1-69*02	92.3	H1	13	H1-13-1	9	KASGYTFTNYWMH	BBBLBBAAABBBB
K	heavy	Mus.musculus	Mo_IGHV1-69*02	87.7	Mo_IGHV1-69*02	60.0	H2	10	H2-10-1	13	MIDPSKSETT	BBBAAALBBB
K	heavy	Mus.musculus	Mo_IGHV1-69*02	87.7	Mo_IGHV1-69*02	100.0	H3	9	H3-9-*	-1	AREVYYFDY	BBBBLBBAB
K	heavy	Mus.musculus	Mo_IGHV1-69*02	87.7	Mo_IGHV1-69*02	87.5	H4	8	H4-8-1	9	VDKSSNTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV12-44*01	97.1	Mo_IGKV12-44*01	90.9	L1	11	L1-11-1	7	RASENIYSYLT	BBABBAEABBB
L	kappa	Mus.musculus	Mo_IGKV12-44*01	97.1	Mo_IGKV12-44*01	87.5	L2	8	L2-8-*	-1	YNAKTLTE	BLLABBBA
L	kappa	Mus.musculus	Mo_IGKV12-44*01	97.1	Mo_IGKV12-44*01	100.0	L3	9	L3-9-cis7-2	17	QHHYGTPPT	BBABEBbBB
L	kappa	Mus.musculus	Mo_IGKV12-44*01	97.1	Mo_IGKV12-44*01	100.0	L4	6	L4-6-1	9	GSGTQF	EBEABB
M	heavy	Mus.musculus	Mo_IGHV1-69*02	87.7	Mo_IGHV1-69*02	92.3	H1	13	H1-13-1	9	KASGYTFTNYWMH	BBBLBBAAABBBB
M	heavy	Mus.musculus	Mo_IGHV1-69*02	87.7	Mo_IGHV1-69*02	60.0	H2	10	H2-10-1	13	MIDPSKSETT	BBBAAALBBB
M	heavy	Mus.musculus	Mo_IGHV1-69*02	87.7	Mo_IGHV1-69*02	100.0	H3	9	H3-9-*	-1	AREVYYFDY	BBBBLBBAB
M	heavy	Mus.musculus	Mo_IGHV1-69*02	87.7	Mo_IGHV1-69*02	87.5	H4	8	H4-8-1	9	VDKSSNTA	BBAAALBB
N	kappa	Mus.musculus	Mo_IGKV12-44*01	97.1	Mo_IGKV12-44*01	90.9	L1	11	L1-11-1	7	RASENIYSYLT	BBABBAEABBB
N	kappa	Mus.musculus	Mo_IGKV12-44*01	97.1	Mo_IGKV12-44*01	87.5	L2	8	L2-8-*	-1	YNAKTLTE	BLLABBBA
N	kappa	Mus.musculus	Mo_IGKV12-44*01	97.1	Mo_IGKV12-44*01	100.0	L3	9	L3-9-cis7-2	17	QHHYGTPPT	BBABEBbBB
N	kappa	Mus.musculus	Mo_IGKV12-44*01	97.1	Mo_IGKV12-44*01	100.0	L4	6	L4-6-1	9	GSGTQF	EBEABB
O	heavy	Mus.musculus	Mo_IGHV1-69*02	87.7	Mo_IGHV1-69*02	92.3	H1	13	H1-13-1	9	KASGYTFTNYWMH	BBBLBBAAABBBB
O	heavy	Mus.musculus	Mo_IGHV1-69*02	87.7	Mo_IGHV1-69*02	60.0	H2	10	H2-10-1	13	MIDPSKSETT	BBBAAALBBB
O	heavy	Mus.musculus	Mo_IGHV1-69*02	87.7	Mo_IGHV1-69*02	100.0	H3	9	H3-9-*	-1	AREVYYFDY	BBBBLBBAB
O	heavy	Mus.musculus	Mo_IGHV1-69*02	87.7	Mo_IGHV1-69*02	87.5	H4	8	H4-8-1	9	VDKSSNTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022