PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5SX4

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV4-61*08	93.2	Hu_IGHV4-61*08	86.7	H1	15	H1-15-2	15	TVSGGSVSsgDYYWT	BBBLBBAABAABBBB
H	heavy	Homo.sapiens	Hu_IGHV4-61*08	93.2	Hu_IGHV4-61*08	77.8	H2	9	H2-9-1	10	HIYYSGNTN	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-61*08	93.2	Hu_IGHV4-61*08	50.0	H3	11	H3-11-1	23	VRDRVTGAFDI	BBBBAALBBAB
H	heavy	Homo.sapiens	Hu_IGHV4-61*08	93.2	Hu_IGHV4-61*08	75.0	H4	8	H4-8-1	14	IDTSKTQF	BBAAALBB
I	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L1	11	L1-11-1	5	QASQDISNYLN	BBABBAEABBB
I	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L2	8	L2-8-1	8	YDASNLET	BLLABBBB
I	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	57.1	L3	9	L3-9-cis7-1	12	QHFDHlPLA	BBAABBbBB
I	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	13	GSGTDF	EBEABB
J	heavy	Homo.sapiens	Hu_IGHV4-61*08	93.2	Hu_IGHV4-61*08	86.7	H1	15	H1-15-2	13	TVSGGSVSsgDYYWT	BBBLBBAABAABBBB
J	heavy	Homo.sapiens	Hu_IGHV4-61*08	93.2	Hu_IGHV4-61*08	77.8	H2	9	H2-9-1	11	HIYYSGNTN	BBBAALBBB
J	heavy	Homo.sapiens	Hu_IGHV4-61*08	93.2	Hu_IGHV4-61*08	50.0	H3	11	H3-11-1	22	VRDRVTGAFDI	BBBBAALBBAB
J	heavy	Homo.sapiens	Hu_IGHV4-61*08	93.2	Hu_IGHV4-61*08	75.0	H4	8	H4-8-1	16	IDTSKTQF	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L1	11	L1-11-1	6	QASQDISNYLN	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L2	8	L2-8-1	9	YDASNLET	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	57.1	L3	9	L3-9-cis7-1	12	QHFDHlPLA	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022