PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5OTJ

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	lambda	Homo.sapiens	Hu_IGLV1-40*01	92.6	Hu_IGLV1-40*01	85.7	L1	14	L1-14-3	12	TGGSSNFGAgYDVH	BBBAAAAAALBBBB
A	lambda	Homo.sapiens	Hu_IGLV1-40*01	92.6	Hu_IGLV1-40*01	87.5	L2	8	L2-8-1	15	YGNNNRPS	BLEABBBB
A	lambda	Homo.sapiens	Hu_IGLV1-40*01	92.6	Hu_IGLV1-40*01	77.8	L3	11	L3-11-1	8	QSFDTSLSGWI	BBBBAAALBBB
A	lambda	Homo.sapiens	Hu_IGLV1-40*01	92.6	Hu_IGLV1-40*01	100.0	L4	6	L4-6-2	11	KSGTSA	BBEABB
B	heavy	Homo.sapiens	Hu_IGHV1-3*04	84.9	Hu_IGHV1-3*04	92.3	H1	13	H1-13-1	10	KASGYTFTSYAIH	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV1-3*04	84.9	Hu_IGHV1-3*04	80.0	H2	10	H2-10-1	11	RINTDNGNTK	BBBAAALBBB
B	heavy	Homo.sapiens	Hu_IGHV1-3*04	84.9	Hu_IGHV1-3*04	100.0	H3	14	H3-14-*	-1	ARAFYYSSGVMFDS	BBBBBBAAEBBBAB
B	heavy	Homo.sapiens	Hu_IGHV1-3*04	84.9	Hu_IGHV1-3*04	87.5	H4	8	H4-8-1	6	RDTSASTT	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV1-3*04	84.9	Hu_IGHV1-3*04	92.3	H1	13	H1-13-1	9	KASGYTFTSYAIH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-3*04	84.9	Hu_IGHV1-3*04	80.0	H2	10	H2-10-*	-1	RINTDNGNTK	BBBAAAbBBB
H	heavy	Homo.sapiens	Hu_IGHV1-3*04	84.9	Hu_IGHV1-3*04	100.0	H3	14	H3-14-*	-1	ARAFYYSSGVMFDS	BBBBBBAAEBBBAB
H	heavy	Homo.sapiens	Hu_IGHV1-3*04	84.9	Hu_IGHV1-3*04	87.5	H4	8	H4-8-1	5	RDTSASTT	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV1-40*01	92.6	Hu_IGLV1-40*01	85.7	L1	14	L1-14-3	8	TGGSSNFGAgYDVH	BBBAAAAAALBBBB
L	lambda	Homo.sapiens	Hu_IGLV1-40*01	92.6	Hu_IGLV1-40*01	87.5	L2	8	L2-8-1	17	YGNNNRPS	BLEABBBB
L	lambda	Homo.sapiens	Hu_IGLV1-40*01	92.6	Hu_IGLV1-40*01	77.8	L3	11	L3-11-1	7	QSFDTSLSGWI	BBBBAAALBBB
L	lambda	Homo.sapiens	Hu_IGLV1-40*01	92.6	Hu_IGLV1-40*01	100.0	L4	6	L4-6-3	28	KSGTSA	BBAABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022