PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5OCL

#CDRs = 4; #Clusters = 7.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	98.6	Al_IGHV3S53*01_VHH	46.2	H1	13	H1-13-1	9	AASGIIFRELGID	BBBLBBAAABBBB
A	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	98.6	Al_IGHV3S53*01_VHH	55.6	H2	9	H2-9-1	7	SIASAGMTN	BBBAALBBB
A	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	98.6	Al_IGHV3S53*01_VHH	0.0	H3	9	H3-9-*	-1	HTLPRFSHL	BBBABABBB
A	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	98.6	Al_IGHV3S53*01_VHH	100.0	H4	8	H4-8-1	5	RDNAKNTV	BBAAALBB
B	heavy	Lama.glama	La_IGHV1S3*01_VHH	91.8	La_IGHV1S3*01_VHH	61.5	H1	13	H1-13-5	12	AASGRTWSIYGMG	BBBEBAAABABBB
B	heavy	Lama.glama	La_IGHV1S3*01_VHH	91.8	CDRLenMismatch	-1.0	H2	10	H2-10-1	15	GITWRGGNTH	BBBAAALBBB
B	heavy	Lama.glama	La_IGHV1S3*01_VHH	91.8	La_IGHV1S3*01_VHH	50.0	H3	17	H3-17-*	-1	AANPNpsgSSVYRRNDY
B	heavy	Lama.glama	La_IGHV1S3*01_VHH	91.8	La_IGHV1S3*01_VHH	87.5	H4	8	H4-8-1	13	RDNVKNTV	BBAAALBB
C	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	98.6	Al_IGHV3S53*01_VHH	46.2	H1	13	H1-13-1	15	AASGIIFRELGID	BBBLBBAAABBBB
C	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	98.6	Al_IGHV3S53*01_VHH	55.6	H2	9	H2-9-1	9	SIASAGMTN	BBBAALBBB
C	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	98.6	Al_IGHV3S53*01_VHH	0.0	H3	9	H3-9-*	-1	HTLPRFSHL	BBBAAABBB
C	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	98.6	Al_IGHV3S53*01_VHH	100.0	H4	8	H4-8-1	10	RDNAKNTV	BBAAALBB
D	heavy	Lama.glama	La_IGHV1S3*01_VHH	91.8	La_IGHV1S3*01_VHH	61.5	H1	13	H1-13-5	13	AASGRTWSIYGMG	BBBEBAAABABBB
D	heavy	Lama.glama	La_IGHV1S3*01_VHH	91.8	CDRLenMismatch	-1.0	H2	10	H2-10-1	14	GITWRGGNTH	BBBAAALBBB
D	heavy	Lama.glama	La_IGHV1S3*01_VHH	91.8	La_IGHV1S3*01_VHH	50.0	H3	17	H3-17-*	-1	AANPNpsgssvYRRNDY
D	heavy	Lama.glama	La_IGHV1S3*01_VHH	91.8	La_IGHV1S3*01_VHH	87.5	H4	8	H4-8-1	13	RDNVKNTV	BBAAALBB
E	heavy	Lama.glama	La_IGHV1S3*01_VHH	91.8	La_IGHV1S3*01_VHH	61.5	H1	13	H1-13-5	15	AASGRTWSIYGMG	BBBEBAAABABBB
E	heavy	Lama.glama	La_IGHV1S3*01_VHH	91.8	CDRLenMismatch	-1.0	H2	10	H2-10-1	14	GITWRGGNTH	BBBAAALBBB
E	heavy	Lama.glama	La_IGHV1S3*01_VHH	91.8	La_IGHV1S3*01_VHH	50.0	H3	17	H3-17-*	-1	AANPNpsgssvyRRNDY
E	heavy	Lama.glama	La_IGHV1S3*01_VHH	91.8	La_IGHV1S3*01_VHH	87.5	H4	8	H4-8-1	14	RDNVKNTV	BBAAALBB
F	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	98.6	Al_IGHV3S53*01_VHH	46.2	H1	13	H1-13-1	16	AASGIIFRELGID	BBBLBBAAABBBB
F	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	98.6	Al_IGHV3S53*01_VHH	55.6	H2	9	H2-9-1	7	SIASAGMTN	BBBAALBBB
F	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	98.6	Al_IGHV3S53*01_VHH	0.0	H3	9	H3-9-*	-1	HTLPRFSHL	BBBAAABBB
F	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	98.6	Al_IGHV3S53*01_VHH	100.0	H4	8	H4-8-1	12	RDNAKNTV	BBAAALBB
G	heavy	Lama.glama	La_IGHV1S3*01_VHH	91.8	La_IGHV1S3*01_VHH	61.5	H1	13	H1-13-5	12	AASGRTWSIYGMG	BBBEBAAABABBB
G	heavy	Lama.glama	La_IGHV1S3*01_VHH	91.8	CDRLenMismatch	-1.0	H2	10	H2-10-1	14	GITWRGGNTH	BBBAAALBBB
G	heavy	Lama.glama	La_IGHV1S3*01_VHH	91.8	La_IGHV1S3*01_VHH	50.0	H3	17	H3-17-*	-1	AANPNpsgSSVYRRNDY
G	heavy	Lama.glama	La_IGHV1S3*01_VHH	91.8	La_IGHV1S3*01_VHH	87.5	H4	8	H4-8-1	14	RDNVKNTV	BBAAALBB
H	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	98.6	Al_IGHV3S53*01_VHH	46.2	H1	13	H1-13-1	9	AASGIIFRELGID	BBBLBBAAABBBB
H	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	98.6	Al_IGHV3S53*01_VHH	55.6	H2	9	H2-9-1	7	SIASAGMTN	BBBAALBBB
H	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	98.6	Al_IGHV3S53*01_VHH	0.0	H3	9	H3-9-*	-1	HTLPRFSHL	BBBABABBB
H	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	98.6	Al_IGHV3S53*01_VHH	100.0	H4	8	H4-8-1	3	RDNAKNTV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022