PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5NYX

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV4-61*01	93.2	Hu_IGHV4-61*01	86.7	H1	15	H1-15-2	16	TVSGGSVSSgsSYWT	BBBLBBAABAABBBB
H	heavy	Homo.sapiens	Hu_IGHV4-61*01	93.2	Hu_IGHV4-61*01	66.7	H2	9	H2-9-1	15	YTSYSGSTK	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-61*01	93.2	Hu_IGHV4-61*01	100.0	H3	15	H3-15-*	-1	ARDRFDvASGSSFDF
H	heavy	Homo.sapiens	Hu_IGHV4-61*01	93.2	Hu_IGHV4-61*01	87.5	H4	8	H4-8-1	12	VDMSKNQF	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.2	Hu_IGKV1-39*01	90.9	L1	11	L1-11-1	5	RASQSISNYLN	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.2	Hu_IGKV1-39*01	87.5	L2	8	L2-8-1	3	YAASSLGS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.2	Hu_IGKV1-39*01	71.4	L3	8	L3-8-3	10	QQSYGSPT	BBAABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.2	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	11	GSGTDL	EBEABB
M	heavy	Homo.sapiens	Hu_IGHV4-61*01	93.2	Hu_IGHV4-61*01	86.7	H1	15	H1-15-2	15	TVSGGSVSSgsSYWT	BBBLBBAABAABBBB
M	heavy	Homo.sapiens	Hu_IGHV4-61*01	93.2	Hu_IGHV4-61*01	66.7	H2	9	H2-9-1	13	YTSYSGSTK	BBBAALBBB
M	heavy	Homo.sapiens	Hu_IGHV4-61*01	93.2	Hu_IGHV4-61*01	100.0	H3	15	H3-15-*	-1	ARDRFDvASGSSFDF
M	heavy	Homo.sapiens	Hu_IGHV4-61*01	93.2	Hu_IGHV4-61*01	87.5	H4	8	H4-8-1	12	VDMSKNQF	BBAAALBB
N	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.2	Hu_IGKV1-39*01	90.9	L1	11	L1-11-1	5	RASQSISNYLN	BBABBAEABBB
N	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.2	Hu_IGKV1-39*01	87.5	L2	8	L2-8-1	4	YAASSLGS	BLLABBBB
N	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.2	Hu_IGKV1-39*01	71.4	L3	8	L3-8-3	9	QQSYGSPT	BBAABBBB
N	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.2	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	11	GSGTDL	EBEABB
O	heavy	Homo.sapiens	Hu_IGHV4-61*01	93.2	Hu_IGHV4-61*01	86.7	H1	15	H1-15-2	17	TVSGGSVSSgsSYWT	BBBLBBAABAABBBB
O	heavy	Homo.sapiens	Hu_IGHV4-61*01	93.2	Hu_IGHV4-61*01	66.7	H2	9	H2-9-1	19	YTSYSGSTK	BBBAALBBB
O	heavy	Homo.sapiens	Hu_IGHV4-61*01	93.2	Hu_IGHV4-61*01	100.0	H3	15	H3-15-*	-1	ARDRFDvASGSSFDF
O	heavy	Homo.sapiens	Hu_IGHV4-61*01	93.2	Hu_IGHV4-61*01	87.5	H4	8	H4-8-1	14	VDMSKNQF	BBAAALBB
P	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.2	Hu_IGKV1-39*01	90.9	L1	11	L1-11-1	6	RASQSISNYLN	BBABBAEABBB
P	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.2	Hu_IGKV1-39*01	87.5	L2	8	L2-8-*	-1	yaasslgs
P	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.2	Hu_IGKV1-39*01	71.4	L3	8	L3-8-3	10	QQSYGSPT	BBAABBBB
P	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.2	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	12	GSGTDL	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022