PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5NUZ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV1-5*01	97.3	Mo_IGHV1-5*01	92.3	H1	13	H1-13-1	7	KASGYTFTSYWMH	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV1-5*01	97.3	Mo_IGHV1-5*01	80.0	H2	10	H2-10-1	11	AIYPGDSDTK	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV1-5*01	97.3	Mo_IGHV1-5*01	100.0	H3	13	H3-13-*	-1	TRRNTLTGDYFDY	BBBBABLEBBBAB
A	heavy	Mus.musculus	Mo_IGHV1-5*01	97.3	Mo_IGHV1-5*01	87.5	H4	8	H4-8-1	7	AVTSTSTA	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV3-2*01	100.0	Mo_IGKV3-2*01	93.3	L1	15	L1-15-1	8	RASESVDDYgisfMN	BBABBABBLLBBBBB
B	kappa	Mus.musculus	Mo_IGKV3-2*01	100.0	Mo_IGKV3-2*01	75.0	L2	8	L2-8-1	5	YTASSQGS	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV3-2*01	100.0	Mo_IGKV3-2*01	100.0	L3	9	L3-9-cis7-1	5	QQSKEVPYT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV3-2*01	100.0	Mo_IGKV3-2*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV1-5*01	97.3	Mo_IGHV1-5*01	92.3	H1	13	H1-13-1	7	KASGYTFTSYWMH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-5*01	97.3	Mo_IGHV1-5*01	80.0	H2	10	H2-10-1	11	AIYPGDSDTK	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-5*01	97.3	Mo_IGHV1-5*01	100.0	H3	13	H3-13-*	-1	TRRNTLTGDYFDY	BBBBABLEBBBAB
H	heavy	Mus.musculus	Mo_IGHV1-5*01	97.3	Mo_IGHV1-5*01	87.5	H4	8	H4-8-1	7	AVTSTSTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV3-2*01	100.0	Mo_IGKV3-2*01	93.3	L1	15	L1-15-1	8	RASESVDDYgisfMN	BBABBABBLLBBBBB
L	kappa	Mus.musculus	Mo_IGKV3-2*01	100.0	Mo_IGKV3-2*01	75.0	L2	8	L2-8-1	6	YTASSQGS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV3-2*01	100.0	Mo_IGKV3-2*01	100.0	L3	9	L3-9-cis7-1	5	QQSKEVPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV3-2*01	100.0	Mo_IGKV3-2*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022