PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5NML

#CDRs = 4; #Clusters = 6.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	38.5	H1	13	H1-13-3	16	VVSGSAVSDYAMG	BBBEAAAAABBBB
A	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	55.6	H2	9	H2-9-1	10	AIYNSGRTN	BBBAALBBB
A	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	50.0	H3	12	H3-12-*	-1	NLLGATTMSNAV	BBAAAAABABBB
A	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	75.0	H4	8	H4-8-1	8	KDNAKKTV	BBAAALBB
B	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	38.5	H1	13	H1-13-3	17	VVSGSAVSDYAMG	BBBEAAAAABBBB
B	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	55.6	H2	9	H2-9-1	11	AIYNSGRTN	BBBAALBBB
B	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	50.0	H3	12	H3-12-*	-1	NLLGATTMSNAV	BBBLAAABBBAL
B	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	75.0	H4	8	H4-8-1	8	KDNAKKTV	BBAAALBB
C	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	38.5	H1	13	H1-13-3	16	VVSGSAVSDYAMG	BBBEAAAAABBBB
C	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	55.6	H2	9	H2-9-1	10	AIYNSGRTN	BBBAALBBB
C	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	50.0	H3	12	H3-12-*	-1	NLLGATTMSNAV	BBBLAAABBLAE
C	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	75.0	H4	8	H4-8-1	8	KDNAKKTV	BBAAALBB
D	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	38.5	H1	13	H1-13-3	16	VVSGSAVSDYAMG	BBBEAAAAABBBB
D	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	55.6	H2	9	H2-9-1	11	AIYNSGRTN	BBBAALBBB
D	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	50.0	H3	12	H3-12-*	-1	NLLGATTMSNAV	BBBLAAABABBB
D	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	75.0	H4	8	H4-8-1	8	KDNAKKTV	BBAAALBB
E	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	38.5	H1	13	H1-13-3	17	VVSGSAVSDYAMG	BBBEAAAAABBBB
E	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	55.6	H2	9	H2-9-1	10	AIYNSGRTN	BBBAALBBB
E	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	50.0	H3	12	H3-12-*	-1	NLLGATTMSNAV	BBBLAAABABAL
E	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	75.0	H4	8	H4-8-1	8	KDNAKKTV	BBAAALBB
F	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	38.5	H1	13	H1-13-3	16	VVSGSAVSDYAMG	BBBEAAAAABBBB
F	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	55.6	H2	9	H2-9-1	10	AIYNSGRTN	BBBAALBBB
F	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	50.0	H3	12	H3-12-*	-1	NLLGATTMSNAV	BBABAAABABBB
F	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	75.0	H4	8	H4-8-1	8	KDNAKKTV	BBAAALBB
G	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	38.5	H1	13	H1-13-3	17	VVSGSAVSDYAMG	BBBEAAAAABBBB
G	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	55.6	H2	9	H2-9-1	10	AIYNSGRTN	BBBAALBBB
G	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	50.0	H3	12	H3-12-*	-1	NLLGAttmsnav
G	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	75.0	H4	8	H4-8-1	8	KDNAKKTV	BBAAALBB
H	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	38.5	H1	13	H1-13-3	17	VVSGSAVSDYAMG	BBBEAAAAABBBB
H	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	55.6	H2	9	H2-9-1	10	AIYNSGRTN	BBBAALBBB
H	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	50.0	H3	12	H3-12-*	-1	NLLGATTMSNAV	BBAAAAABABBB
H	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	75.0	H4	8	H4-8-1	8	KDNAKKTV	BBAAALBB
I	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	38.5	H1	13	H1-13-3	17	VVSGSAVSDYAMG	BBBEAAAAABBBB
I	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	55.6	H2	9	H2-9-1	10	AIYNSGRTN	BBBAALBBB
I	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	50.0	H3	12	H3-12-*	-1	NLLGATTMSNAV	BBBLAAABABAL
I	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	75.0	H4	8	H4-8-1	8	KDNAKKTV	BBAAALBB
J	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	38.5	H1	13	H1-13-*	-1	vvsgsavSDYAMG
J	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	55.6	H2	9	H2-9-1	11	AIYNSGRTN	BBBAALBBB
J	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	50.0	H3	12	H3-12-*	-1	NLLgattmsnav
J	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	75.0	H4	8	H4-8-*	-1	kdnakktv

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022