PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5NBM

#CDRs = 4; #Clusters = 4.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	89.0	Al_IGHV3-3*01_VHH	69.2	H1	13	H1-13-*	-1	TASGRTFTNYGMG	BBBEBBAAABBBB
E	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	89.0	Al_IGHV3-3*01_VHH	40.0	H2	10	H2-10-*	-1	AIGRFGFPLY	BBBAALBbBB
E	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	89.0	Al_IGHV3-3*01_VHH	100.0	H3	17	H3-17-*	-1	AARNPRataEDVSAYDY
E	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	89.0	Al_IGHV3-3*01_VHH	87.5	H4	8	H4-8-1	11	RDNAKTTV	BBAAALBB
F	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	89.0	Al_IGHV3-3*01_VHH	69.2	H1	13	H1-13-*	-1	TASGRTFTNYGMG	BBBEBBAAABBBB
F	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	89.0	Al_IGHV3-3*01_VHH	40.0	H2	10	H2-10-*	-1	AIGRFGFPLY	BBBAALBbBB
F	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	89.0	Al_IGHV3-3*01_VHH	100.0	H3	17	H3-17-*	-1	AARNPRataEDVSAYDY
F	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	89.0	Al_IGHV3-3*01_VHH	87.5	H4	8	H4-8-1	11	RDNAKTTV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022