PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5N2K

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	CDRLenMismatch	-1.0	L1	13	L1-13-1	10	SGSRSNIGSNTVK	BBBAAAAAABBBB
A	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	62.5	L2	8	L2-8-1	7	YYNDQRPS	BLLABBBB
A	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	44.4	L3	12	L3-12-*	-1	QSYDRYTHpALL
A	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L4	6	L4-6-2	8	KSGTSA	BBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H1	13	H1-13-1	7	AASGFTFSSYGMH	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H2	10	H2-10-2	6	FIRYDGSNKY	BBBAALABBB
B	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	0.0	H3	8	H3-8-*	-1	KTHGSHDN	BBBEABBB
B	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H4	8	H4-8-1	5	RDNSKNTL	BBAAALBB
C	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	CDRLenMismatch	-1.0	L1	13	L1-13-1	10	SGSRSNIGSNTVK	BBBAAAAAABBBB
C	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	62.5	L2	8	L2-8-1	8	YYNDQRPS	BLLABBBB
C	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	44.4	L3	12	L3-12-*	-1	QSYDRYTHpALL
C	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L4	6	L4-6-2	8	KSGTSA	BBEABB
D	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H1	13	H1-13-1	7	AASGFTFSSYGMH	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H2	10	H2-10-2	6	FIRYDGSNKY	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	0.0	H3	8	H3-8-*	-1	KTHGSHDN	BBBEABBB
D	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H4	8	H4-8-1	4	RDNSKNTL	BBAAALBB
E	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	CDRLenMismatch	-1.0	L1	13	L1-13-1	10	SGSRSNIGSNTVK	BBBAAAAAABBBB
E	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	62.5	L2	8	L2-8-1	8	YYNDQRPS	BLLABBBB
E	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	44.4	L3	12	L3-12-*	-1	QSYDRYTHpALL
E	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L4	6	L4-6-2	7	KSGTSA	BBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H1	13	H1-13-1	7	AASGFTFSSYGMH	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H2	10	H2-10-2	6	FIRYDGSNKY	BBBAALABBB
F	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	0.0	H3	8	H3-8-*	-1	KTHGSHDN	BBBEABBB
F	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H4	8	H4-8-1	4	RDNSKNTL	BBAAALBB
G	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	CDRLenMismatch	-1.0	L1	13	L1-13-1	10	SGSRSNIGSNTVK	BBBAAAAAABBBB
G	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	62.5	L2	8	L2-8-1	8	YYNDQRPS	BLLABBBB
G	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	44.4	L3	12	L3-12-*	-1	QSYDRYTHpALL
G	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L4	6	L4-6-2	8	KSGTSA	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H1	13	H1-13-1	7	AASGFTFSSYGMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H2	10	H2-10-2	6	FIRYDGSNKY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	0.0	H3	8	H3-8-*	-1	KTHGSHDN	BBBEABBB
H	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H4	8	H4-8-1	4	RDNSKNTL	BBAAALBB
I	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	CDRLenMismatch	-1.0	L1	13	L1-13-1	10	SGSRSNIGSNTVK	BBBAAAAAABBBB
I	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	62.5	L2	8	L2-8-1	8	YYNDQRPS	BLLABBBB
I	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	44.4	L3	12	L3-12-*	-1	QSYDRYTHpALL
I	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L4	6	L4-6-2	8	KSGTSA	BBEABB
J	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H1	13	H1-13-1	7	AASGFTFSSYGMH	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H2	10	H2-10-2	6	FIRYDGSNKY	BBBAALABBB
J	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	0.0	H3	8	H3-8-*	-1	KTHGSHDN	BBBEABBB
J	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H4	8	H4-8-1	4	RDNSKNTL	BBAAALBB
K	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	CDRLenMismatch	-1.0	L1	13	L1-13-1	10	SGSRSNIGSNTVK	BBBAAAAAABBBB
K	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	62.5	L2	8	L2-8-1	8	YYNDQRPS	BLLABBBB
K	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	44.4	L3	12	L3-12-*	-1	QSYDRYTHpALL
K	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L4	6	L4-6-2	8	KSGTSA	BBEABB
L	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H1	13	H1-13-1	7	AASGFTFSSYGMH	BBBLBBAAABBBB
L	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H2	10	H2-10-2	6	FIRYDGSNKY	BBBAALABBB
L	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	0.0	H3	8	H3-8-*	-1	KTHGSHDN	BBBEABBB
L	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H4	8	H4-8-1	4	RDNSKNTL	BBAAALBB
M	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	CDRLenMismatch	-1.0	L1	13	L1-13-1	10	SGSRSNIGSNTVK	BBBAAAAAABBBB
M	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	62.5	L2	8	L2-8-1	8	YYNDQRPS	BLLABBBB
M	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	44.4	L3	12	L3-12-*	-1	QSYDRYTHpALL
M	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L4	6	L4-6-2	8	KSGTSA	BBEABB
N	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H1	13	H1-13-1	7	AASGFTFSSYGMH	BBBLBBAAABBBB
N	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H2	10	H2-10-2	6	FIRYDGSNKY	BBBAALABBB
N	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	0.0	H3	8	H3-8-*	-1	KTHGSHDN	BBBEABBB
N	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H4	8	H4-8-1	4	RDNSKNTL	BBAAALBB
O	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	CDRLenMismatch	-1.0	L1	13	L1-13-1	10	SGSRSNIGSNTVK	BBBAAAAAABBBB
O	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	62.5	L2	8	L2-8-1	8	YYNDQRPS	BLLABBBB
O	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	44.4	L3	12	L3-12-*	-1	QSYDRYTHpALL
O	lambda	Homo.sapiens	Hu_IGLV1-40*01	100.0	Hu_IGLV1-40*01	100.0	L4	6	L4-6-2	8	KSGTSA	BBEABB
P	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H1	13	H1-13-1	7	AASGFTFSSYGMH	BBBLBBAAABBBB
P	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H2	10	H2-10-2	6	FIRYDGSNKY	BBBAALABBB
P	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	0.0	H3	8	H3-8-*	-1	KTHGSHDN	BBBEABBB
P	heavy	Homo.sapiens	Hu_IGHV3-30*02	98.6	Hu_IGHV3-30*02	100.0	H4	8	H4-8-1	4	RDNSKNTL	BBAAALBB

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