PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5MYO

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	93.8	L1	16	L1-16-1	5	KSSQSLlysdgKTYLN	BBABBABBAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L2	8	L2-8-1	3	YLVSKLDS	BLEABBBB
A	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L3	9	L3-9-cis7-1	7	VQGTHFPFT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1-37*01	93.2	Mo_IGHV1-37*01	92.3	H1	13	H1-13-1	6	KASGYSFTGYTMN	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-37*01	93.2	Mo_IGHV1-37*01	70.0	H2	10	H2-10-1	12	LINPYNGVTR	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1-37*01	93.2	Mo_IGHV1-37*01	50.0	H3	12	H3-12-*	-1	TREAKREWDETY	BBBBABAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-37*01	93.2	Mo_IGHV1-37*01	100.0	H4	8	H4-8-1	8	VDKSSSTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	93.8	L1	16	L1-16-1	7	KSSQSLlysdgKTYLN	BBABBABBAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L2	8	L2-8-1	3	YLVSKLDS	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L3	9	L3-9-cis7-1	8	VQGTHFPFT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L4	6	L4-6-3	18	GSGTDF	EAAABB
D	heavy	Mus.musculus	Mo_IGHV1-37*01	93.2	Mo_IGHV1-37*01	92.3	H1	13	H1-13-1	7	KASGYSFTGYTMN	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1-37*01	93.2	Mo_IGHV1-37*01	70.0	H2	10	H2-10-1	8	LINPYNGVTR	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1-37*01	93.2	Mo_IGHV1-37*01	50.0	H3	12	H3-12-*	-1	TREAKREWDETY	BBBBABAABBBB
D	heavy	Mus.musculus	Mo_IGHV1-37*01	93.2	Mo_IGHV1-37*01	100.0	H4	8	H4-8-1	9	VDKSSSTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022