PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5MP6

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV4-31*05	86.3	Hu_IGHV4-31*05	46.7	H1	15	H1-15-2	13	NVYGVAISneDYYWT	BBBLBBAABAABBBB
H	heavy	Homo.sapiens	Hu_IGHV4-31*05	86.3	None	-1.0	H2	10	H2-10-1	10	DIYYNSGTTH	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-31*05	86.3	Hu_IGHV4-31*05	100.0	H3	17	H3-17-*	-1	AREASTKitdDGGAFDF
H	heavy	Homo.sapiens	Hu_IGHV4-31*05	86.3	Hu_IGHV4-31*05	75.0	H4	8	H4-8-1	12	VDLSRNQF	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV2-14*01	88.2	Hu_IGLV2-14*01	85.7	L1	14	L1-14-2	11	TGTSSDIGgYKYVS	BBBAAAAAABABBB
L	lambda	Homo.sapiens	Hu_IGLV2-14*01	88.2	Hu_IGLV2-14*01	62.5	L2	8	L2-8-1	9	YDVIKRPS	BLLABBBB
L	lambda	Homo.sapiens	Hu_IGLV2-14*01	88.2	Hu_IGLV2-14*01	55.6	L3	19	L3-19-*	-1	SSYTTKKTsffgpatrAYV
L	lambda	Homo.sapiens	Hu_IGLV2-14*01	88.2	Hu_IGLV2-14*01	83.3	L4	6	L4-6-2	10	KSANTA	BBEABB
P	heavy	Homo.sapiens	Hu_IGHV4-31*05	86.3	Hu_IGHV4-31*05	46.7	H1	15	H1-15-2	13	NVYGVAISneDYYWT	BBBLBBAABAABBBB
P	heavy	Homo.sapiens	Hu_IGHV4-31*05	86.3	None	-1.0	H2	10	H2-10-*	-1	DIYYNSGTTH	BBBAABABBB
P	heavy	Homo.sapiens	Hu_IGHV4-31*05	86.3	Hu_IGHV4-31*05	100.0	H3	17	H3-17-*	-1	AREASTKitdDGGAFDF
P	heavy	Homo.sapiens	Hu_IGHV4-31*05	86.3	Hu_IGHV4-31*05	75.0	H4	8	H4-8-1	10	VDLSRNQF	BBAAALBB
Q	lambda	Homo.sapiens	Hu_IGLV2-14*01	88.2	Hu_IGLV2-14*01	85.7	L1	14	L1-14-2	9	TGTSSDIGgYKYVS	BBBAAAAAABABBB
Q	lambda	Homo.sapiens	Hu_IGLV2-14*01	88.2	Hu_IGLV2-14*01	62.5	L2	8	L2-8-1	9	YDVIKRPS	BLEABBBB
Q	lambda	Homo.sapiens	Hu_IGLV2-14*01	88.2	Hu_IGLV2-14*01	55.6	L3	19	L3-19-*	-1	SSYTTkktsffgpatrAYV
Q	lambda	Homo.sapiens	Hu_IGLV2-14*01	88.2	Hu_IGLV2-14*01	83.3	L4	6	L4-6-2	7	KSANTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022