PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5MP1

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Mus.musculus	Mo_IGHV1-75*01	89.0	Mo_IGHV1-75*01	76.9	H1	13	H1-13-1	9	KASGYIFTDYVIS	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV1-75*01	89.0	Mo_IGHV1-75*01	80.0	H2	10	H2-10-1	8	EIFPRSGSTY	BBBAAALBBB
C	heavy	Mus.musculus	Mo_IGHV1-75*01	89.0	Mo_IGHV1-75*01	100.0	H3	13	H3-13-*	-1	ARDYYGTSFAMDY	BBBBBLAALBBAB
C	heavy	Mus.musculus	Mo_IGHV1-75*01	89.0	Mo_IGHV1-75*01	75.0	H4	8	H4-8-1	7	ADKSSNTA	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV8-21*01	100.0	Mo_IGKV8-21*01	100.0	L1	17	L1-17-*	-1	KSSQSLlnsrtrKNYLA	BBABBABBABEABBBBB
D	kappa	Mus.musculus	Mo_IGKV8-21*01	100.0	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	10	YWASTRES	BLEABBBB
D	kappa	Mus.musculus	Mo_IGKV8-21*01	100.0	Mo_IGKV8-21*01	66.7	L3	8	L3-8-1	8	KQSFYLRT	BBAABEBB
D	kappa	Mus.musculus	Mo_IGKV8-21*01	100.0	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
F	heavy	Mus.musculus	Mo_IGHV1-75*01	89.0	Mo_IGHV1-75*01	76.9	H1	13	H1-13-1	9	KASGYIFTDYVIS	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV1-75*01	89.0	Mo_IGHV1-75*01	80.0	H2	10	H2-10-1	8	EIFPRSGSTY	BBBAAALBBB
F	heavy	Mus.musculus	Mo_IGHV1-75*01	89.0	Mo_IGHV1-75*01	100.0	H3	13	H3-13-*	-1	ARDYYGTSFAMDY	BBBBBLAALBBAB
F	heavy	Mus.musculus	Mo_IGHV1-75*01	89.0	Mo_IGHV1-75*01	75.0	H4	8	H4-8-1	7	ADKSSNTA	BBAAALBB
G	kappa	Mus.musculus	Mo_IGKV8-21*01	100.0	Mo_IGKV8-21*01	100.0	L1	17	L1-17-*	-1	KSSQSLlnsrtrKNYLA	BBABBABBABAABBBBB
G	kappa	Mus.musculus	Mo_IGKV8-21*01	100.0	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	9	YWASTRES	BLLABBBB
G	kappa	Mus.musculus	Mo_IGKV8-21*01	100.0	Mo_IGKV8-21*01	66.7	L3	8	L3-8-1	12	KQSFYLRT	BBAABEBB
G	kappa	Mus.musculus	Mo_IGKV8-21*01	100.0	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV1-75*01	89.0	Mo_IGHV1-75*01	76.9	H1	13	H1-13-1	9	KASGYIFTDYVIS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-75*01	89.0	Mo_IGHV1-75*01	80.0	H2	10	H2-10-1	8	EIFPRSGSTY	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-75*01	89.0	Mo_IGHV1-75*01	100.0	H3	13	H3-13-*	-1	ARDYYGTSFAMDY	BBBBBLAALBBAB
H	heavy	Mus.musculus	Mo_IGHV1-75*01	89.0	Mo_IGHV1-75*01	75.0	H4	8	H4-8-1	8	ADKSSNTA	BBAAALBB
J	heavy	Mus.musculus	Mo_IGHV1-75*01	89.0	Mo_IGHV1-75*01	76.9	H1	13	H1-13-1	8	KASGYIFTDYVIS	BBBLBBAAABBBB
J	heavy	Mus.musculus	Mo_IGHV1-75*01	89.0	Mo_IGHV1-75*01	80.0	H2	10	H2-10-1	8	EIFPRSGSTY	BBBAAALBBB
J	heavy	Mus.musculus	Mo_IGHV1-75*01	89.0	Mo_IGHV1-75*01	100.0	H3	13	H3-13-*	-1	ARDYYGTSFAMDY	BBBBBLAALBBAB
J	heavy	Mus.musculus	Mo_IGHV1-75*01	89.0	Mo_IGHV1-75*01	75.0	H4	8	H4-8-1	8	ADKSSNTA	BBAAALBB
K	kappa	Mus.musculus	Mo_IGKV8-21*01	100.0	Mo_IGKV8-21*01	100.0	L1	17	L1-17-*	-1	KSSQSLlnsrtrKNYLA	BBABBABBABABBBBBB
K	kappa	Mus.musculus	Mo_IGKV8-21*01	100.0	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	9	YWASTRES	BLEABBBB
K	kappa	Mus.musculus	Mo_IGKV8-21*01	100.0	Mo_IGKV8-21*01	66.7	L3	8	L3-8-1	11	KQSFYLRT	BBAABEBB
K	kappa	Mus.musculus	Mo_IGKV8-21*01	100.0	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
L	kappa	Mus.musculus	Mo_IGKV8-21*01	100.0	Mo_IGKV8-21*01	100.0	L1	17	L1-17-*	-1	KSSQSLlnsrtrKNYLA	BBABBABBABEBBBBBB
L	kappa	Mus.musculus	Mo_IGKV8-21*01	100.0	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	8	YWASTRES	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV8-21*01	100.0	Mo_IGKV8-21*01	66.7	L3	8	L3-8-1	10	KQSFYLRT	BBAABEBB
L	kappa	Mus.musculus	Mo_IGKV8-21*01	100.0	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022